Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq46143 143 3e-29 seq39983 118 1e-21 seq44488 116 4e-21 seq43815 116 4e-21 seq35973 107 2e-18 seq39238 105 7e-18 seq3294 105 7e-18 >seq46143 Length=82526 Score = 143 bits (158), Expect = 3e-29 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| |||| || |||||| || || ||||| || | |||||| || | Sbjct 41659 ACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 41600 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || || ||||||||||| | || | || ||||| Sbjct 41599 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 41540 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 41539 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 41481 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||||||||||||| || ||||| || || || ||||||||| Sbjct 41480 TGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 41440 >seq39983 Length=4479 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| || | ||| ||||||||| || ||||| || |||||| || | Sbjct 251 ACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACC 192 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || ||||| ||||||||||| | || | || |||||| Sbjct 191 GTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 132 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| || | || | Sbjct 131 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAA 73 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| |||||||| || ||||| ||||| Sbjct 72 TGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq44488 Length=18910 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || |||||| || |||| || |||||||| || || || Sbjct 18862 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 18803 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | || | Sbjct 18802 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTAGACTTCACAT 18744 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || || ||||||| |||||| || |||||||| |||||||| | Sbjct 18743 TGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCA 18684 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| |||||||| Sbjct 18683 CGAAGATCTGCATTTT 18668 >seq43815 Length=14243 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| |||||||| | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| ||||| || |||| | | | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGA-CATTG 5129 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| | ||||| ||| Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 5068 AAGATCTGCAT 5058 >seq35973 Length=2546 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 408 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAA 467 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||||| |||| ||| Sbjct 468 GATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGA-CGT 526 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || ||||| || | ||||| | Sbjct 527 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCA 586 Query 42196 CAAAGATTTGCAT 42208 | || || ||||| Sbjct 587 CGAAAATCTGCAT 599 >seq39238 Length=3815 Score = 105 bits (116), Expect = 7e-18 Identities = 145/196 (74%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 3597 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAA 3656 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC-ATGATTTTTTGTTTGAGCG 42135 || || ||||||||||| | || | || ||||||||| | |||||||| |||| || Sbjct 3657 GATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTAATTTTTTGCTTGA-CG 3715 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT-AGCGTCTT 42193 | | | | || ||| | ||||| || | |||||| || ||||| ||| | ||||| Sbjct 3716 TTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTT 3775 Query 42194 TAC-AAAGATTTGCAT 42208 || |||||| ||||| Sbjct 3776 CACAAAAGATCTGCAT 3791 >seq3294 Length=374 Score = 105 bits (116), Expect = 7e-18 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42017 CTCCTT-TTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGA 42075 |||||| ||| || ||||| || |||||| || |||| || |||||||| || || | Sbjct 337 CTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAA 278 Query 42076 ATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 | ||||| ||||||||||| | || | || |||||||||| ||| | || | | || Sbjct 277 AGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTAGACTTCACG 219 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | || ||| || ||||| || | || ||||| |||||||| |||||||| Sbjct 218 TTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTC 159 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 158 ACGAAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542898687198400