Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq45717 338 6e-88 >seq45717 Length=39516 Score = 338 bits (374), Expect = 6e-88 Identities = 893/1351 (66%), Gaps = 43/1351 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || ||||| ||||| || || || ||| ||||||| |||||||| Sbjct 3579 GCCACCCCTACTCTCTTCAATGCGGGCACGCCACGTCCCCAGCTGTCTTCTTGTTTCCTC 3638 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| ||| || || | ||||| || ||| | || || Sbjct 3639 TTGGCTATGCAGGATGACTCGATCGAGGGCATCTACGACACTCTAAAGCAATGCGCCTGT 3698 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 3699 ATCTCGAAATGGGCGGGCGGCATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGC 3758 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| | |||| ||||| || || || ||| Sbjct 3759 TACATCCGTGGCACGAACGGCTCGTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAAC 3818 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | |||||||| ||||||||||| || |||| | | ||||| || ||||| |||| Sbjct 3819 GACACAGCGCGCTATGTGGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTTCGCCATCTAC 3878 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 3879 TTGGAGCCTTGGCACGCCGACGTGTTTGAGTTCCTGGATCTGCGTAAGAACCACGGCAAC 3938 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | ||| | ||| | |||||||| ||||||||||| || || || ||||| Sbjct 3939 GAACTCCACCGCGCCCGCGACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAG 3998 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| ||| ||| | |||||||| || ||||| || ||| || || || | | Sbjct 3999 CGCGTAGAGGCCAACGGCAAGTGGAGTCTCTTCTGTCCTAACGAAGCCCCGGGCCTCTAC 4058 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || | ||| |||| | ||||| | | || | Sbjct 4059 GA--GTGCTGGGGCGACGAGTTCGAAACTCTGTACGAAAAGTACGAGACAGAAGGACGTG 4116 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || | || | |||||||| ||| |||||| ||| | |||| Sbjct 4117 CGCGTAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCTTGGACGCTCAGATCGAGA 4176 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || || | || ||| ||||||| | | |||| |||||| ||||| ||| || Sbjct 4177 CTGGCGTACCTTTTATGCTGTACAAGGACGCAGCCAACCGCAAGTCGAACCAACAGAACT 4236 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || || |||| || | ||| ||| | | |||||||| || || | Sbjct 4237 T---GGGGACCATTCGCTCCAGCAACTTATGCTGCGAAGTGATGGAGTATACATCGCCTG 4293 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC- 94665 | ||| | || ||||| ||| | | ||| || || | | |||||| || ||| Sbjct 4294 ATGAGGTGGCGGTGTGCAACTTAGCGTCCGTCGCGCTCCCTAAGTTCGTGGAGGACGCCG 4353 Query 94666 TACACGTCTACTGC--TTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGG 94723 | || |||| || | || ||| ||| || ||| | | |||| Sbjct 4354 TGTTCGACTACCGCAAGTTGTACGAAGTGGTCAAG---GTG-ATTACGCG---------- 4399 Query 94724 TCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 ||||| |||| ||| || ||| |||| || ||||| | ||||| || | Sbjct 4400 ----CAACCTCAACAAGGTCATAGACGTCAACTATTATCCCGTAGCAGAGGCTCGCAAGT 4455 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || |||||| || || ||||| ||||| || ||| | || ||||| | | Sbjct 4456 CCAACATGCGGCATCGTCCTATTGGCATTGGCGTTCAAGGTCTGGCTGACGCCTTCATCT 4515 Query 94844 TGATGCGTCTGCCC-TACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 ||||| || ||| | ||| | || | ||||| |||||| ||||| Sbjct 4516 TGATG-AACTACCCGTTCGAGAGCCCGCAAGCTCAAGAATTGAACAAGAACATCTTCGAG 4574 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || | | |||||| | ||| | | | ||| ||| || || Sbjct 4575 ACCATCTACTTTGCTGCCATGGAGACGTCCATGGAGATTGCC---GTGGAGTTGGGACCT 4631 Query 94963 CACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG 95020 |||| |||||| || ||||| | | | |||| || || |||||||| | |||| Sbjct 4632 TACGAGACGTTCCAGGGCTCGCCAGCCAGCA--AGGGGATCTTCCAGTTCGATATGTGGG 4689 Query 95021 GTGTGAAGCC---CTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAAC 95077 |||| | || || || || | | |||| || || | ||| || ||||||| Sbjct 4690 GTGTCACACCTCAATCTGGGCTTTGGAATTGGGCCGCACTGAAAGATGACGTAATCAAAC 4749 Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 | ||| | ||| ||||||| || |||||||||||||| ||||||||||| || |||| Sbjct 4750 ATGGTCTTCGCAACTCGCTGCTGGTTGCCCCCATGCCCACAGCCTCCACGGCCCAAATCC 4809 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||||||||||| |||| || | ||| |||||| |||||||| | || ||||| | Sbjct 4810 TGGGCAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGTCGCGTGCTGG 4869 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 | || || ||| || || ||||||||||||| Sbjct 4870 CTGGCGAGTTCACCATCGTCAACAAGCACCT 4900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494437126309600