Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq46143 129 6e-25 seq35973 122 9e-23 seq39238 120 3e-22 seq39983 114 1e-20 seq44488 105 7e-18 seq3294 100 3e-16 seq46075 96.9 3e-15 seq43815 91.5 1e-13 >seq46143 Length=82526 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || | || | | | |||||||| || ||||||||||| | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| |||| |||||||| ||||| || || Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | ||||| | | | |||| | || |||||| Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT-CAATGCTGTCCGACGGCTCCAC 41492 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||| || || || || || || ||||||||||| Sbjct 41491 GTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq35973 Length=2546 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||||||| ||||| |||||| || || || || | Sbjct 176 TTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAG 235 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||||||||| ||||| || ||||| || || |||||||| || | Sbjct 236 CGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGAATTTTTTGCTTGA 295 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | | ||| | | |||||| || | ||| | ||| || || |||| ||| | Sbjct 296 CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCT 355 Query 138599 TTACAAAAATCTGCATG 138615 | ||||| ||||||||| Sbjct 356 TCACAAAGATCTGCATG 372 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || ||||| | Sbjct 406 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCG 465 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||| || | Sbjct 466 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACG 525 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | |||||| || | ||| | ||| || || |||| ||| || Sbjct 526 TTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTC 585 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 586 ACGAAAATCTGCAT 599 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| |||||||||||||| ||||| || ||||| ||||| |||||||| || | | Sbjct 11 AGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGT 70 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | ||| | | |||||| || | ||| | ||| || || |||| ||| || | Sbjct 71 TGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCA 130 Query 138602 CAAAAATCTGCATG 138615 |||||||||||||| Sbjct 131 CAAAAATCTGCATG 144 >seq39238 Length=3815 Score = 120 bits (132), Expect = 3e-22 Identities = 149/200 (75%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || |||||| || || ||||| | Sbjct 3593 TTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAG 3652 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT-CGGTGATTTTTTGTTTT 138537 |||| |||||||| ||||| ||||| || ||||| |||| | || |||||||| || Sbjct 3653 CGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTAATTTTTTGCTTG 3712 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG-TCAGAGT 138596 | | || | | ||| | | |||||| || | ||| | ||| || |||| | | ||| Sbjct 3713 ACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGT 3772 Query 138597 TTTTACAAAA-ATCTGCATG 138615 || |||||| ||||||||| Sbjct 3773 CTTCACAAAAGATCTGCATG 3792 >seq39983 Length=4479 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| ||| | || | | ||||||||||| ||||||||||||||| Sbjct 262 CCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 203 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || || || |||| | |||| || ||||| ||||| || || Sbjct 202 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 143 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| || || || || | | || | | ||| | || |||||| Sbjct 142 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 83 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || ||||| || || || || ||||||||| Sbjct 82 TCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq44488 Length=18910 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| |||||| |||||| || || || |||| | Sbjct 18864 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCA 18805 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| || || || || || ||||| ||| | || | || Sbjct 18804 AAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC-CTGAATCTTAGACTTCAC 18746 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | | ||| | || ||| || |||| ||| | || || || ||||| || | Sbjct 18745 ATTG-TCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTGCCCGTCAGCGTCT 18687 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 18686 TCACGAAGATCTGCAT 18671 >seq3294 Length=374 Score = 100 bits (110), Expect = 3e-16 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 138421 GACTCCTT-TTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| ||| |||||||||||||||| |||||| |||||| || || || |||| Sbjct 339 GACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGC 280 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 279 AAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC-CTGAATCTTAGACTTCA 221 Query 138540 --TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||| || | | ||| | || |||||| || | || | || || || ||||| || Sbjct 220 CGTTG-TCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTC 162 Query 138598 TTTACAAAAATCTGCATG 138615 || || || ||||||||| Sbjct 161 TTCACGAAGATCTGCATG 144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| |||||| |||||| || || || |||| | Sbjct 110 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCA 51 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| || ||||| ||||| || || || || || ||||| Sbjct 50 AAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 10 >seq46075 Length=65249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTG 52712 || ||||| ||||| | ||||||||| || | |||||| ||||||| ||||||||| Sbjct 31713 CTCCCGGTGGAGCTCATCGGCATGAACTCGGCGCTCATGTGTCAGTACATTGAGTTTGTG 31654 Query 52713 GCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTACTTCAACGCTCGCAATCCGTT 52771 || |||||||| || || || | | || ||| || ||||| || || || Sbjct 31653 GCAGATCGTCTTCTGTACTCACTGGGTGTATCC-AAGATCTACAACGTGAAGAACCCATT 31595 Query 52772 TGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGG 52831 || | ||| ||| || || || |||||||||| ||||| ||||||||||| || || Sbjct 31594 CGACTGGATGGACATGATCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGCGCGTGGG 31535 Query 52832 CGAGTAT 52838 ||||||| Sbjct 31534 CGAGTAT 31528 >seq43815 Length=14243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || || | ||| Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || || || || ||||| ||||| || || | |||| Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTG- 5129 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || |||| || || ||| Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 5068 AAGATCTGCATG 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495975436267200