Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq35973 84.2 2e-11 >seq35973 Length=2546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | |||||| || || || || || |||||||| |||| Sbjct 143 TGCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGC 202 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | |||| || | || ||||||||| | |||| |||||||||||| | Sbjct 203 TCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAG 262 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || |||||| || || | || || | || | || | Sbjct 263 GGATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 322 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| | || || || || || |||| ||| || ||||| || ||||| Sbjct 323 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | ||||| ||||| || || || |||||||| |||| Sbjct 371 TGCCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 430 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | |||| || | || || |||||| | |||| |||||| ||||| | Sbjct 431 TCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAG 490 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| |||||| || || | || || | || | || | Sbjct 491 GGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 550 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 |||| | || || || || || |||| ||| || || ||||| |||||| ||| Sbjct 551 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCATAGTTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357190504624100