Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq35973 152 5e-32 seq46143 131 2e-25 seq39983 114 1e-20 seq43815 93.3 4e-14 seq3294 93.3 4e-14 seq46075 89.7 5e-13 seq44488 89.7 5e-13 >seq35973 Length=2546 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||||||| || || || ||||| |||| | Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 432 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || ||||| Sbjct 433 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 492 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||| ||||||| ||||| ||| | ||||| | ||| || Sbjct 493 ATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGT-CGATCGAGTCCGAAGGCTCCAC 551 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||| ||| || || ||||||||||| Sbjct 552 GTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 105 bits (116), Expect = 6e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||||| ||||| || || ||||| ||||| ||||||||| ||||| ||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 127034 TTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||||| ||| | ||| | | ||| || || | || | ||| |||||||||| Sbjct 64 TTGACGTTGT-CGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAA 122 Query 127093 AGTTTTTACAAAAATCTGCATG 127114 ||| || ||||||||||||||| Sbjct 123 AGTCTTCACAAAAATCTGCATG 144 >seq46143 Length=82526 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||| || | || ||||| || || || ||||| || | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| |||||||| || || || Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| |||||||||||||| | || | | |||||| ||| || Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 41491 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | |||||||| || || || || || ||||||||||| Sbjct 41490 TCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq39983 Length=4479 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||| || | || ||||| ||||| || ||||| |||| Sbjct 263 TCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCT 204 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| || || ||||| || || || |||| | |||||||| || || || Sbjct 203 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 144 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| | Sbjct 143 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 85 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 84 CGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq43815 Length=14243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || |||||| ||||| Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| ||||||||||||| | || Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCA 5126 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| |||| || || ||||| Sbjct 5125 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 5066 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 5065 ATCTGCATG 5057 >seq3294 Length=374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTT-TTGAATATTGTAATCGCC 126945 ||||| || | || | ||||| || | || ||||| || ||| || ||||| |||| Sbjct 372 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCT 313 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| || || ||||| || || || |||| | |||||||| || || || Sbjct 312 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 253 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || || ||| | |||| |||| | ||||| ||| | Sbjct 252 GATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 194 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 193 CGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 >seq46075 Length=65249 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | | ||| | ||||||| || ||||| || || || || || || Sbjct 31695 GGCATGAACTCGGCGCTCATGTGTCAGTACATTGAGTTTGTGGCAGATCGTCTTCT-GTA 31637 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| |||||| ||||| ||| || |||| |||||||| | ||| ||| | Sbjct 31636 CTCACTGGGTGTATCC-AAGATCTACAACGTGAAGAACCCATTCGACTGGATGGACATGA 31578 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 | || || |||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 31577 TCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGCGCGTGGGCGAGTAT 31528 >seq44488 Length=18910 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 18897 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 18838 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || |||| | |||||||| || || || Sbjct 18837 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 18778 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||| | | |||| | ||||| ||| || Sbjct 18777 ATGCCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACA 18718 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || || || |||||||| Sbjct 18717 TCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475225841662400