Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq35973 122 8e-23 >seq35973 Length=2546 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| |||||||||||||| ||||| || || ||||| | || || || Sbjct 162 CACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTC 221 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| || || ||||| || || |||||||| ||||| || Sbjct 222 CAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTG 281 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||||| |||| || | || | | ||| |||| ||| || || || || | ||| | Sbjct 282 AATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 340 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | ||| || ||||| || ||||| Sbjct 341 TGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || ||||| || ||||| ||||| || || ||||| | || || || Sbjct 390 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 449 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| || |||||||| || || |||||||| || || || Sbjct 450 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 509 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||||| |||| || | || | | ||| |||| ||| || || || || | ||| | Sbjct 510 AATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 568 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | ||| || || ||||| ||||| Sbjct 569 TGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| || || ||||| || || |||||||| || || ||||||||||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | | ||| |||| ||| || || || || | ||| |||||||| | Sbjct 64 TTGA-CGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAA 122 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||| || |||||||| ||||| Sbjct 123 AGTCTTCACAAAAATCTGCAT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451741829149600