Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq45717 257 2e-63 seq46202 138 1e-27 seq46075 127 3e-24 >seq45717 Length=39516 Score = 257 bits (284), Expect = 2e-63 Identities = 1066/1654 (64%), Gaps = 62/1654 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| ||||||||| || | ||||| || | | ||| Sbjct 5192 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAAAAGTGCATGGACGTGAGCTT 5133 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 115676 || || || | ||| || ||||| ||| ||| | ||| || | Sbjct 5132 ACTGATAGTCGGGTCAGCGATGTGGATGTTCAGCGACTGACTCTGGCA--GAT--AT-AC 5078 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||| || || ||||| | || || | ||| ||||| ||||| |||||||| ||| | Sbjct 5077 GCG-CCTCGGTCCGCTGACAAGTCCAGAACAGCCTTCTGTTTGATCTCCCACACCGTTTT 5019 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| | ||||| || || || || | ||| ||||||| |||||||| | || Sbjct 5018 GTACTTCTCCTTAACGTCTTCCGGAATGGTCTTGATCTTTTGGACTGAGCCACCATCATT 4959 Query 115797 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || ||| | | || ||| | ||||| || | || | || |||| || Sbjct 4958 CAGAATCTGAT--TGCGTACTTCCGGCGTCCAGATTCCGAGCTCGATTAGTTCCTTCATC 4901 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 |||||||| ||||| | ||||| || || || ||| | || ||||||| | Sbjct 4900 AGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGAC 4841 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| | |||| ||||| |||| ||||||||| |||||||||||||||||| Sbjct 4840 GTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATG 4781 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | || || |||||| ||||| | | | || || || ||| || Sbjct 4780 GGGGCAACCAGCAGCGAGTTGCGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCC 4721 Query 116035 CAGT-------CGTAG-TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 || | | || ||||| | || | |||| ||||||| ||||||| ||| | Sbjct 4720 CAATTCCAAAGCCCAGATTGAGGTGTGACACCCC-----ACATATCGAACTGGAAGATCC 4666 Query 116087 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC-CGCCAAT-TC 116144 | | | |||||||| |||| || ||||| || || ||| ||| | || |||| || Sbjct 4665 CCTTGCTGGCTGGCGAGCCCTGGAACGTCTCGTAAGGTCCC--AACTCCACGGCAATCTC 4608 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | || ||| | ||| || || || ||||| || ||| |||| | | || Sbjct 4607 CATGGACGTCTCCATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTC-TT 4549 Query 116205 GGCCTCGTCGGAA-TCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGG 116262 | || | || || |||| | | || ||| || || | || || |||||||| Sbjct 4548 GAGCTTGCGGGCTCTCGAACGGGT-AGTTCATCAAGATGAAGGCGTCAGCCAGACCTTGA 4490 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATA 116321 || || | |||||| || ||||| | ||| || ||||| ||||| ||| | |||||||| Sbjct 4489 ACGCCAATGCCAATAGGACGATGCCGCATGTTGGACTTGCGAGCC-TCTGCTACGGGATA 4431 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 | | || || || ||| | || || || || | ||||| | ||| | | Sbjct 4430 ATAGTTGACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTACAA 4371 Query 116382 CTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 116440 ||| ||| || || || ||| || | || ||||||| || |||| |||| Sbjct 4370 CTTGCGGTAGTCGAACACGGCG-------TCCTCCACGAACTTAGGGAGCGCGACGGACG 4318 Query 116441 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 116500 | | || ||||| | |||||| || ||||| || | ||| || || | Sbjct 4317 CTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCACTTCGCAGCATAAGT 4258 Query 116501 T--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 | || | |||||| |||||||||| ||| || ||||| ||| || ||||| Sbjct 4257 TGCTGGAGCG--AATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCTT 4200 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATC 116618 ||| |||||| | || || ||||| | || | | | || || ||| || | Sbjct 4199 GTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCA--CAGC 4142 Query 116619 GGCGGCTGGCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 || || | | ||| || || || || || |||||||||| ||| || | Sbjct 4141 TGCTGCGCGTTGA-TGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTACAGAGT 4083 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 || ||||| || ||| |||| ||| |||| || || || | | |||||||||||| Sbjct 4082 TTCGAACTCGTCGCCC-CAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGAC 4024 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 ||| | || |||| || |||||||||||||| || || | ||||||||| ||| Sbjct 4023 TCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGA 3964 Query 116795 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854 | | || || ||| ||| | || || || ||||| |||| || || | Sbjct 3963 ACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAA 3904 Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAG 116911 | || |||||||| || |||| ||| | |||| || |||||||| | || Sbjct 3903 ACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGC 3844 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971 |||||| ||||| | ||| || ||||||| || || ||||| || || || |||| | Sbjct 3843 CCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGG 3784 Query 116972 ATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATAC 117031 | ||| || || || || || || |||| | || | ||| || |||| Sbjct 3783 ACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATAC 3724 Query 117032 CAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCAT 117091 | || || || ||||| || ||||| ||||| | | | ||| || ||||||| || | Sbjct 3723 CGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATGCCCT 3664 Query 117092 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 117151 ||||||||||| ||| | || | |||||| || |||| || || | ||| || | Sbjct 3663 CGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGC 3604 Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 | || |||||||| || || || ||||| |||| Sbjct 3603 CCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAA 3570 >seq46202 Length=175750 Score = 138 bits (152), Expect = 1e-27 Identities = 391/590 (66%), Gaps = 13/590 (2%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || || |||||||||||||| ||||| || | || Sbjct 40156 CCAGCCTTGGAGTACTCGCCCACTCGTTTCTCGAAGAAGTTCGTCTTTCCCTGAAGAGAA 40215 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| | || | || | | ||| || | | Sbjct 40216 ATCATGTCCATCCAGTCGAACGGGTTCTTAGCGTGGTAGATCTTGGACACACCGAGCGAG 40275 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || |||||||| | ||| |||||||||||| |||| | |||||||| || Sbjct 40276 TACAGCAGACGATCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCA 40335 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | || |||| ||| | |||| | | ||||| |||||| || || Sbjct 40336 ATCAGCTCCACCGGAAGCGAGTCACGTACGAACTCGTGTTCAATCGTCACAGCATCGCGC 40395 Query 127460 ACGATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAG----AGTTC 127515 || || |||| | | | | || || | | | || |||| || || Sbjct 40396 ACAATTTCGTGCACTCGG--CTCTCCGGGAGCTTAGTGACCAG-CTTGGAGTACAAGAGG 40452 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| || || || ||| | ||||||||||| |||||| || |||||||||| || Sbjct 40453 CAC-GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAG 40511 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| ||||||||||| |||||||||||||| ||||| | || || ||||| |||||||| Sbjct 40512 ACCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAA 40571 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT 127694 ||| || || || || || || | |||||||| | | ||| | || | | Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAG-GACACACGAGGGT 40630 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTT 127754 | ||||||| |||||||| || || || || || ||| |||| ||||| || || Sbjct 40631 CGCACCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCAC 40690 Query 127755 CAAAGAGTTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 127803 | || | | ||| || ||||| || ||||||||| | || ||||| Sbjct 40691 GCAGCAGATGGTCCTTCTC-GATGGCGTCCTTGATGTACGTGTCAATGAG 40739 >seq46075 Length=65249 Score = 127 bits (140), Expect = 3e-24 Identities = 302/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||||||||||||||||||||| || | || ||| | ||||| Sbjct 31529 TACTCGCCCACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGTAGTGAGATCATGTCCATC 31588 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGACG 127350 | || ||||||||||| ||| | || | | || |||| | | | || ||||| Sbjct 31589 CAGTCGAATGGGTTCTTCACGTTGTAGATCTTGGATACACCCAGTGAG-TACAGAAGACG 31647 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 ||| | || |||||||||||| | |||| | | |||||||| |||||||| | Sbjct 31648 ATCTGCCACAAACTCAATGTACTGACACATGAGCGCCGAGTTCATGCCGATGAGCTCCAC 31707 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 ||||| | || | | |||| | | |||||| ||||||| || || | ||| | || Sbjct 31708 CGGGAGAGAATCGCACACGAACTCGTGCTCAATCGCCACAGCGTCACGAATGATCTCATG 31767 Query 127471 AATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC---CACAGCAAACT 127526 | | | || | ||| | | || | || | || | || ||| || || | Sbjct 31768 GACACGACTCTCCGGCAGCT-TGTT--GACCAGCTTCGAGTACATCAGGCAC-GCGAAGT 31823 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| | ||||||||| || || | ||| |||||||||| || || ||||| | Sbjct 31824 CCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGAAGCTTAGGCCAGGCATAA 31883 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| | | || || ||||| ||||||||||| || |||| Sbjct 31884 GTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTGAGAAGAAGATTCCTTCCA 31943 Query 127647 CACACGCGAACGCAAATAGACGCTCGGC 127674 | || ||||| | |||||||| || Sbjct 31944 CTGCAGCAAACGCTAGCAGACGCTCTGC 31971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613152439461600