Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq45717 127 3e-24 seq46202 96.9 6e-15 >seq45717 Length=39516 Score = 127 bits (140), Expect = 3e-24 Identities = 407/620 (66%), Gaps = 21/620 (3%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACATG 203896 || ||||| |||||||| ||||| | |||| || | | | || ||||||||| Sbjct 5239 TTATCCACGGTGAACTGGATGGCAT---CGGCTTTCGGACGTCCACGCATGTAGTACATG 5183 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||||||| || ||||||| ||| |||| | ||||||||| | || || || | | Sbjct 5182 CCGGTCTTGAGTCCCTTCTTCCAGGCGTAAAAGTGCATGGACGTGAGCTTACTGATAGTC 5123 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 ||||| || ||||| |||||||| ||||| || ||| ||| | | ||||| || || || Sbjct 5122 GGGTCAGCGATGTGGATGTTCAGCGACTGACTCTGGCAGAT-ATACGCGCCTCGGTCCGC 5064 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | || | | || | |||||| |||||||||||||| ||| || || | Sbjct 5063 TGACAAGTCCAGAACAGCCTTCTGTTTGATCTCCCACACCGTTTTGTACTTCTCCTTAAC 5004 Query 204076 GTGTTGAGGCA-CATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || || || | |||| | | || ||||| || || | ||| || Sbjct 5003 GTCTTCCGGAATGGTCTT-GATCTTTTGGACTGAGCCACCATCATTCA-GAATCTGAT-T 4947 Query 204135 TCGT--CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 ||| ||| | ||| || || | | ||| || ||| || |||||| ||||| Sbjct 4946 GCGTACTTCCGGCGTCCAGATTCCGAGCTCGATTAGTTCCTTCATCAGGTGCTTGTTGAC 4887 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 ||| || || || | |||||| | ||| || ||| |||| ||| | || |||| Sbjct 4886 GATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGACGTGTACGGCTCGAT 4827 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | |||||||||||| | || || || ||| ||| ||||||||||| || | ||||| Sbjct 4826 AGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATGGGGGCAACCAGCAG 4767 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| | ||| | ||| || ||||| | || ||| | | || || Sbjct 4766 CGAGTTGCGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCCCAAT--TCCAAAGC 4709 Query 204373 ACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | | ||| | || |||||||| |||||||| ||||| || | ||| |||| | Sbjct 4708 CCAGATTGAGGTGTGACACCCCACATATCGAACTGGAAGATCCCCTTGCTGGCTGGCGAG 4649 Query 204428 CCCTTGTACGTCGGATAAGG 204447 |||| | ||||| ||||| Sbjct 4648 CCCTGGAACGTCTCGTAAGG 4629 >seq46202 Length=175750 Score = 96.9 bits (106), Expect = 6e-15 Identities = 287/435 (66%), Gaps = 17/435 (4%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||| ||||| |||| | || || ||||| | |||| |||||| Sbjct 40183 TTCTCGAAGAAGTTCGTCTTTCCCTGAAGAGAAATCATGTCCATCCAGTCGAACGGGTTC 40242 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 || |||| ||| ||| | | ||||| | ||||| | || ||||| || || Sbjct 40243 TTAGCGTGGTAGATCTTGGACACACCGAGCGAGTACAGCAGACGATCAGCCACGAACTCA 40302 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 ||||| ||||| | | |||| || || | |||| || || |||| || Sbjct 40303 ATGTACTGGCACATGAGGCCCGAGTTCATGCCAATCAGCTCCACCGGAAGCGAGTCACGT 40362 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCC 159889 | ||||| | |||||| || || ||| |||||| | || | ||| | | | || Sbjct 40363 ACGAACTCGTGTTCAATCGTCACAGCATCGCGCACAATTT-CGTG-CAC-TCGGCTCTCC 40419 Query 159890 GG---CTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 || ||| | ||| || || ||| ||||||||| ||||| ||||| Sbjct 40420 GGGAGCTTAGTGACCAGCTTGGAGT------ACAAGAGGCACGCGAAGTCCGTGTGCATG 40473 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| ||| ||||| |||||| || | | |||| || ||||||| |||||| Sbjct 40474 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGACCACGCTTC 40533 Query 160004 TTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062 || | ||||||||||| ||| |||| || || ||||| || || || || ||||| Sbjct 40534 TTCAACCAAAAAATGG-AGCAGAAAGAGCCCGAGAAGAAGATGCCTTCTACTGCAGCAAA 40592 Query 160063 CGCCACGAGCCTCTC 160077 |||| ||| | ||| Sbjct 40593 AGCCAGGAGACGCTC 40607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794695401505600