Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq46143 168 8e-37 seq39983 152 6e-32 seq43815 149 7e-31 seq44488 138 1e-27 seq3294 129 7e-25 seq35973 113 5e-20 seq39238 98.7 1e-15 >seq46143 Length=82526 Score = 168 bits (186), Expect = 8e-37 Identities = 171/220 (78%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||||||||| |||| || |||||| ||||| |||||||| || |||||||| | Sbjct 41659 ACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 41600 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||||||||| |||| ||||||||||| | ||| | || ||||| Sbjct 41599 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 41540 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||| |||| ||||| | | | || | |||| || ||||| || | ||||| Sbjct 41539 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 41481 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||||||||| || || || || || || |||||||| Sbjct 41480 TGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq39983 Length=4479 Score = 152 bits (168), Expect = 6e-32 Identities = 182/243 (75%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 46352 GTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGG 46411 ||||| | ||| || || || | | ||||| ||||| || | ||| |||||||||| Sbjct 276 GTACT-TCTTAGTTTCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGG 218 Query 46412 ATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGC 46471 || ||||||||| ||||| || |||| || |||||||||||||| || || | |||| Sbjct 217 ATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGC 158 Query 46472 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGT 46530 |||||||| | ||| | || |||||||||| ||||||| ||| | ||| | | | || Sbjct 157 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGA 99 Query 46531 GTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 ||| || ||||| || | || ||||| |||||||||||||| || || ||||| || Sbjct 98 GTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTG 39 Query 46591 CAT 46593 ||| Sbjct 38 CAT 36 >seq43815 Length=14243 Score = 149 bits (164), Expect = 7e-31 Identities = 149/191 (78%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||| ||||| | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | | |||||||||| || |||| ||||| | | | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGA-CATTG 5129 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| |||||||||| || || ||| Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5068 AAGATCTGCAT 5058 >seq44488 Length=18910 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| ||||| || |||| || Sbjct 18880 CACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTC 18821 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || || | |||||||||||| | ||| | || |||||||||| Sbjct 18820 AAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 18761 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | | | | || ||| || || ||||| | |||||| || || Sbjct 18760 AATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTT 18701 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||||||||| || || ||||| ||||||||| Sbjct 18700 GCCCGTCAGCGTCTTCACGAAGATCTGCATTTTG 18667 >seq3294 Length=374 Score = 129 bits (142), Expect = 7e-25 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||||| || | || |||||| |||||| ||||||||| ||||| || |||| | Sbjct 355 CACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCT 296 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 | |||||||||||||| || || | |||||||||||| | ||| | || |||||||||| Sbjct 295 CAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCT 236 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | ||| | | | || ||| || ||||| || | || ||||| Sbjct 235 GAATCTTAGACTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTC 177 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||||||| || || ||||| ||||| Sbjct 176 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| ||||| || |||| || Sbjct 126 CACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTC 67 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || || | |||||||||||| | ||| | || |||||||||| Sbjct 66 AAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 7 Query 46504 GATCTT 46509 ||||| Sbjct 6 AATCTT 1 >seq35973 Length=2546 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 390 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 449 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 450 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 509 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 || || | ||||| ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 510 AATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 568 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| || || || || || ||||| Sbjct 569 TGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || ||||| ||||| ||||||||| || || || |||| || Sbjct 162 CACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTC 221 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| ||||| ||||| | || | || ||||| ||| Sbjct 222 CAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTG 281 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 || || | ||||| ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 282 AATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 340 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| || || |||||||| ||||| Sbjct 341 TGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 >seq39238 Length=3815 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || ||||| |||| || Sbjct 3579 CACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 3638 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC-A 46502 |||||||| || ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 3639 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 3698 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 | || || | ||||| ||| | | | || ||| | ||||| |||| |||||| || Sbjct 3699 TAATTTTTTGCTTGA-CGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTC 3757 Query 46562 TTGCCCG-TCAGCGTTTTAAC-AAAGATTTGCAT 46593 ||||| | | | || || || |||||| ||||| Sbjct 3758 TTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564911550895200