Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq46202 196 5e-45 seq46075 179 4e-40 seq46143 143 3e-29 seq39983 129 6e-25 seq43815 120 3e-22 seq3294 114 1e-20 seq44488 113 5e-20 seq35973 113 5e-20 seq39238 95.1 1e-14 >seq46202 Length=175750 Score = 196 bits (216), Expect = 5e-45 Identities = 412/606 (68%), Gaps = 10/606 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| ||||||||| | ||||| ||||| ||| | | Sbjct 40452 GCACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAG 40511 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||| || || || || | |||||| |||| | |||| |||||| ||||| Sbjct 40512 ACCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAA 40571 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||| || || || || ||||||| || ||||| | ||| || | | | Sbjct 40572 GATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGTC 40631 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCG 133131 | ||| | |||||| | || |||||| |||| || || || || || || || Sbjct 40632 GCACCACTTGATCGCCCAGTGAGC--TTTCTTGGTGACACAAGGGATGGTCTCAATTGCA 40689 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 || || | || ||||| | | | ||| ||||| ||||| || || Sbjct 40690 CGCAGCAGATGGTCCTTCTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAGAGAGTAA 40749 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | |||||||| | |||||| |||||||| || |||||||||||||| || || || | Sbjct 40750 ACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGC 40809 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||||||||| | | |||| | |||| || ||||| || || || |||||||| Sbjct 40810 ACCTGCACTTCATTACTGAAATTCATTGCCAGGTTCTCGTTCACAATTCCATCGCTGGCA 40869 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC--GCTCCC 133369 ||||| ||||| ||||| || |||||||| || ||||||||||| | |||| ||| || Sbjct 40870 GCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGT-AAGCTTGCT-CC 40927 Query 133370 AGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||| | | | | || | ||| || | ||||||| | ||||| || || ||||| || Sbjct 40928 AGTC-CTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCC 40986 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 || || ||||| ||||| || | || ||||| || | || || ||| |||| Sbjct 40987 TTCTTATACATCTGCCACACTTCGTGCTCCTGAATGGGGAAGAGAACGAAGCGGTTGGGG 41046 Query 133489 TTTTCG 133494 || ||| Sbjct 41047 TTCTCG 41052 >seq46075 Length=65249 Score = 179 bits (198), Expect = 4e-40 Identities = 407/609 (67%), Gaps = 20/609 (3%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| ||| || ||||| |||| |||||||| | ||| | |||||| || Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| ||||| || || || || |||||||| || | || | ||| ||| | Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTG 31925 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| || || || || || || || | ||| ||||| || ||| Sbjct 31926 AGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTACGA-------- 31977 Query 133067 TGCTGGCGATCCA-GCGCAGCGC-CCATTCGGCCTTTTCTTT--GACGCACGGCATCGTT 133122 |||| || | | | | ||||| | |||||| ||| ||||| || || Sbjct 31978 ------CGATACACGTGGGTCACACCATTTGAGTGTTTCTTCTGGACACACGGGATGGTC 32031 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGG 133182 ||||| || | | || |||||| ||| | ||| ||||| || || Sbjct 32032 TCGATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGC 32091 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| || | ||||||||| | |||||| || ||||| || ||||| |||||||| || Sbjct 32092 AGCGAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGA 32151 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 || || | ||||||||| | | ||| | | ||||||| ||||||||||| ||| Sbjct 32152 GCTTCAGGGATCTGCACTTCGTTACTGAAGTTCATGGCCAGATTCTCGTTGACGATACCG 32211 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 || ||||| ||||| ||||| ||||||||||||||||| || ||||| ||||| | | Sbjct 32212 TCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGT 32271 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 | |||||||| | | | || || || |||| ||||||| | ||||| || || || Sbjct 32272 TTCGCCCAGTCG-TTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGC 32330 Query 133422 CTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 ||| || || |||||||| ||||| || | || ||||| || | ||| || || Sbjct 32331 CTCTGCCTTCTTGTACATCTGCCACACATCGTGCTCCTGGATGGGGAAGAGCACGAAGCG 32390 Query 133482 GCGGGGGTT 133490 | ||| || Sbjct 32391 GTTGGGATT 32399 >seq46143 Length=82526 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || ||||||||||||||||| ||||||| ||| | Sbjct 41441 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAGCCG 41500 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||||| | | | | || | ||||||| ||||| || || | ||||||| || Sbjct 41501 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCA-TCCCGCCTGA 41559 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || || | ||||| || ||||| Sbjct 41560 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGACTA 41619 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| ||||| ||||| || | || || Sbjct 41620 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGTTGCGTCTGCGTGGTGG 41670 >seq39983 Length=4479 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| ||||| ||| | ||||| ||| | | Sbjct 36 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 95 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| ||||| || |||||| |||| Sbjct 96 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 153 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || ||||| ||||| || |||| || || || | |||||||| Sbjct 154 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACA 213 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| |||| || || |||| |||||| | | ||||| Sbjct 214 ACATCCAAAAGGAGTCGACACTCCACCTGGTTCTGCGTCTTCGCGGCGG 262 >seq43815 Length=14243 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| |||||||| | ||||| ||| | || Sbjct 5058 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5117 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||| | ||||| |||||||| |||||| ||||| Sbjct 5118 GACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAAT-CCCGCCTGACCA 5176 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 5177 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 5236 Query 38423 CATCCAAAAGGAAGCGAC 38440 |||||| |||| ||||| Sbjct 5237 CATCCAGAAGGGTGCGAC 5254 >seq3294 Length=374 Score = 114 bits (126), Expect = 1e-20 Identities = 168/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| ||||| ||| | ||||| ||| | | Sbjct 145 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 204 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || || || | ||||| ||||| || |||||| |||| Sbjct 205 GACTCGATCGACAACG-TGAAGTCTAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 262 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || ||||| ||||| || |||| || || || | |||||||| Sbjct 263 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACA 322 Query 38422 ACATCCAA-AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| |||| || || ||||||| || || | || ||| Sbjct 323 ACATCCAAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || |||||| ||||| ||||| ||||| | || ||||| ||||| || Sbjct 10 GACAAGGAGGGCAT-CCCGCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGA 68 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| || || || | ||||||||||||||| ||||| |||| || || ||||||| Sbjct 69 GGACGGTCGTACTCTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCT 128 Query 38456 GCGTTTGAGAGGCGGC 38471 || || | || ||| Sbjct 129 TCGCCTGCGTGGTGGC 144 >seq44488 Length=18910 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || ||||| |||||||| || ||||| |||| || ||| | Sbjct 18668 AAAATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAGCCG 18727 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | ||| | | | | || || || | ||||| ||||| || |||||| || Sbjct 18728 TCGGACTCGATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGA 18786 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || |||| || || || | |||||| Sbjct 18787 CCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTA 18846 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| |||| || || ||||||| || Sbjct 18847 CAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCG 18885 >seq35973 Length=2546 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| | ||||| ||| | | Sbjct 371 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 312 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || ||||||| | || || || || || || | ||||| Sbjct 311 GACTCGATCGACAACG-TCAAGCAAAAAATTCAGGATAAGGAAGGCATCCCTCCTGACCA 253 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 252 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACGCTGAGCGACTACAA 193 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | ||||| ||| ||||||| || || | || ||| Sbjct 192 CATCCAGAAGGAATCAACGCTTCATCTGGTGCTTCGCCTGCGTGGTGGC 144 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | | Sbjct 599 ATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 540 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || ||||||| | ||||| || || || || | ||||| Sbjct 539 GACTCGATCGACAACG-TCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCA 481 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 480 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 421 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | ||||| || ||||||| || || | || ||| Sbjct 420 CATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 372 >seq39238 Length=3815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 ||||| | | ||||| || || || || | ||||| ||||| || || | ||| || | Sbjct 3706 AAAAATTACAGGACAAGGAAGGCATCCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGTA 3647 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | |||||||| |||| ||||| || | ||||||||||||||| ||||| | ||||| | Sbjct 3646 AGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCAACGCTTC 3587 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||||| || || | ||||| Sbjct 3586 ACCTGGTGCTTCGCCTGCGTGGCGG 3562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499883575078400