Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq44514 118 8e-21 >seq44514 Length=19118 Score = 118 bits (130), Expect = 8e-21 Identities = 453/701 (65%), Gaps = 14/701 (2%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || || || || ||||| ||||| | || | || | ||| || | || Sbjct 7120 ACCAGACGGTTGTCGAAGTCCTCACCGCCCAAGTGGGTGTCACCCGCCGTCGCCTTGACC 7179 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || ||||||| || | || | || || || || || || | ||| Sbjct 7180 TCGAAGATCCCGTCTTCAATAGTTAGCAGTGAGACGTCGAACGTACCGCCTCCGAGATCG 7239 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || | || || || || || ||||| || | |||||| Sbjct 7240 AAGATCAGCACGTTGTGCTC---GCCTCCTTTCTTGTCGAGCCCATAGGCGATCGCAGCA 7296 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || |||||||| || | || || || ||||||||||| || ||||||||| Sbjct 7297 GCCGTCGGCTCATTAATGATACGCAGCACGTTCAGACCAGCAATAGCCCCAGCATCTTTA 7356 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || | || || ||||| || || || || || || | || |||| | ||| Sbjct 7357 GTCGCCTGACGCTGCGAGTCGTTGAAGTAGGCCGGGACCGTCACCACTGCATTCTTCACT 7416 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | ||| || || |||| || | ||| || | | | ||| || || || Sbjct 7417 TGTTTCCCGATGAAAGCCTCCGCGACCTCGCGCATCTTGATCAGCACCATGGACGAGATC 7476 Query 518375 TGTTCTGG--GGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTA 518431 | |||||| ||||| || ||| | | |||| || || | | | ||||| Sbjct 7477 TCTTCTGGTTGGAATGTTTTCTTC--TCCCCCTTGAACTGC-ACCACCACTTGCGGTTTG 7533 Query 518432 -TTAC--CAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG 518488 || | || || ||| || ||||| ||||||| || || || ||||| || || ||| Sbjct 7534 CTTTCGGCACCACGAATTACGTTAAACGGCCAGTGCTTAATGTCCGATTGCAC-CTCTGG 7592 Query 518489 -TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 || | || | | || || || || || ||||||| | || ||| | || || Sbjct 7593 ATCGGTGAACTTACGTCCGATCAACCGCTTGACATCAAACACCGTGTTGTGCGCGTTCAT 7652 Query 518548 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 518607 || | || | ||||||||||| || || ||| | || || || || || | || || Sbjct 7653 AGCCACCTGGTTCTTGGCTGCATCACCGATGAGACGCTCCGTGTCGGTGAACGCCACGTA 7712 Query 518608 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 518667 || || || ||||| || || ||||| || ||||| || || || | |||| ||||| Sbjct 7713 CGACGGGGTCGTGCGGTTCCCCTGATCGTTGGCAATGATCTCCACGCGATCATTCTGCCA 7772 Query 518668 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 518708 ||||| ||||| | || || || | ||||||||||| Sbjct 7773 CACACCAACACACGAGTAGGTCGTGCCCAGATCAATACCAA 7813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778526826419560