Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq45717 237 2e-57 seq46202 125 9e-24 seq45735 91.5 2e-13 seq46075 86.0 8e-12 >seq45717 Length=39516 Score = 237 bits (262), Expect = 2e-57 Identities = 1061/1651 (64%), Gaps = 56/1651 (3%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| || || || |||||||| || || || ||| | ||||| |||| | Sbjct 3570 TTCACGCACGCCACCCCTACTCTCTTCAATGCGGGCACGCCACGTCCCCAGCTGTCTTCT 3629 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 |||||||| | || | |||| || || ||| | ||||| |||| |||||| | || Sbjct 3630 TGTTTCCTCTTGGCTATGCAGGATGACTCGATCGAGGGCATCTACGACACTCTAAAGCAA 3689 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || ||| ||||| || ||||| || || ||||| || || || | || | ||| Sbjct 3690 TGCGCCTGTATCTCGAAATGGGCGGGCGGCATCGGTATCAGTATGCACAACATCCGCGCC 3749 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | || || | || || || || || |||| ||||| || ||||| || Sbjct 3750 ACTAACAGCTACATCCGTGGCACGAACGGCTCGTCCAATGGCATTATCCCCATGCTGCGT 3809 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| ||||||||||||||| |||| | || | |||||||| || || Sbjct 3810 GTGTTTAACGACACAGCGCGCTATGTGGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTTC 3869 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || |||| | ||||| |||||||| || | | |||||||| || ||||| ||| Sbjct 3870 GCCATCTACTTGGAGCCTTGGCACGCCGACGTGTTTGAGTTCCTGGATCTGCGTAAGAAC 3929 Query 112062 CAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 112121 || || | || || |||||| | |||| ||| |||||| | || |||||| Sbjct 3930 CACGGCAACGAACTCCACCGCGCCCGCGACTTGTTCTACGCGCTCTGGGTGCCTGATCTC 3989 Query 112122 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCC 112181 ||||||||| | || |||| | ||||| ||| |||||| ||||| || | || || Sbjct 3990 TTCATGAAGCGCGTAGAGGCCAACGGCAAGTGGAGTCTCTTCTGTCCTAACGAAGCCCCG 4049 Query 112182 GGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA 112240 || |||| ||| ||| | ||| || ||||| ||| | || ||| |||||||||| ||| Sbjct 4050 GGCCTCTACGAGTGCTG-GGGCGACGAGTTCGAAACTCTGTACGAAAAGTACGAGACAGA 4108 Query 112241 AAGTCGGGCGACTGCGACGGT----GC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAG 112295 | | || ||| | ||| | || |||| || ||||| || || | | Sbjct 4109 AGGACGTGCGCGTAAGACCATCAACGCGCAGCAGC-----TGTGGTTCGCCATCTTGGAC 4163 Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||| | ||||||||| ||| | |||||| ||||| ||||| |||| ||| Sbjct 4164 GCTCAGATCGAGACTGGCGTACCTTTTATGCTGTACAAGGACGCAGCCAACCGCAAGTCG 4223 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTC---CAACCTCTGTACAGAAATCTTGGAA 112412 || ||| |||| ||||| || || | || |||| | || ||| | |||| Sbjct 4224 AACCAACAGAACTTGGG---GACCATTCGCTCCAGCAACTTATGCTGCGAAGTGATGGAG 4280 Query 112413 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 112472 | |||| |||||| ||| ||||| ||| | || || |||| ||||| |||| Sbjct 4281 TATACATCGCCTGATGAGGTGGCGGTGTGCAACTTAGCGTCCGTCGCGCTCCCTAAGTTC 4340 Query 112473 GTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTC 112532 ||||| ||| | || || || || | ||||||| || | Sbjct 4341 GTGGA-----GGACGCCG-TGTTCGACTACCGCAAGTTGTACGAAGTGGTCAAGGTGATT 4394 Query 112533 ACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAA 112591 || ||||| |||| || || || || | ||| ||||| | ||| ||||| || Sbjct 4395 ACGCGCAACCTCAACAAGGTCATAGACGTCAACTATTATCCCGTAGCAGA-GGCTCGCAA 4453 Query 112592 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 || || ||| | || ||||| ||||| | || || |||||||| || || | |||| Sbjct 4454 GTCCAACATGCGGCATCGTCCTATTGGCATTGGCGTTCAAGGTCTGGCTGACGCCTTCA- 4512 Query 112652 TCTTTGT-CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTG 112710 |||| | | || | || || | |||| | ||| | || | || || | Sbjct 4513 TCTTGATGAACTACCCGTTCGAGAGCCCGCAAGCTCAAGAATTGAACAAGAACATCTTCG 4572 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAG--GTTGATGGTCC 112768 |||| || || || || | ||| || |||| | || | | |||| || || Sbjct 4573 AGACCATCTACTTTGCTGCCATGGAGACGTCCATGGAGATTGCCGTGGAGTTG--GGACC 4630 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGG 112826 || || || || |||| || ||||| || ||||||| ||| || || ||||||||| Sbjct 4631 TTACGAGACGTTCCAGGGCTCGCCAGC--CAGCAAGGGGATCTTCCAGTTCGATATGTGG 4688 Query 112827 GAAGGTGAGAC--CAAGCTTCACTACG--ACTGGGACGCTCTCAAGGA--ACG-CATCAA 112879 | || | || ||| || || | | |||| ||| || || || ||| |||| Sbjct 4689 G-GTGTCACACCTCAATCTGGGCTTTGGAATTGGGCCGCACTGAAAGATGACGTAATCA- 4746 Query 112880 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 | | |||||||| ||| || || | || || ||||| ||||||||||| || || Sbjct 4747 --AACATGGTCTTCGCAACTCGCTGCTGGTTGCCCCCATGCCCACAGCCTCCACGGCCCA 4804 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 112999 |||| |||| || || || | | || || |||||| | ||||| || | | Sbjct 4805 AATCCTGGGCAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGTCGCGT 4864 Query 113000 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 113059 || || || ||||| || ||||||||||| || || | || || | ||| | || Sbjct 4865 GCTGGCTGGCGAGTTCACCATCGTCAACAAGCACCTGATGAAGGAACTAATCGAGCTCGG 4924 Query 113060 TCTCTGGTCCAAGGA--TATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAAT 113117 ||||| | ||| || | | ||| || |||| | ||||| || | ||||| Sbjct 4925 AATCTGGACGCCGGAAGTACGCA--ATCAGATTCTGAATGATGGTGGCTCAGTCCAAAAG 4982 Query 113118 ATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATG 113177 || | ||||| || || ||||| || |||| || || ||||| ||||| | Sbjct 4983 ATCAAGACCATTCCGGAAGACGTTAAGGAGAAGTACAAAACGGTGTGGGAGATCAAACAG 5042 Query 113178 AAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTAT 113236 |||| ||| | ||| || | || || || || ||| | || || ||||| | Sbjct 5043 AAGGCTGTTCTGGACTTGTCAGCGGACCGAGG-CGCGTATATCTGCCAGAGTCAGTCGCT 5101 Query 113237 GAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTG 113296 ||| | ||| | || || || |||||| | || |||||| | ||| || Sbjct 5102 GAACATCCACATCGCTGACCCGACTATCAGTAAGCTCACGTCCATGCACTTTTACGCCTG 5161 Query 113297 GAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||||||||| ||||| || || ||||| ||| Sbjct 5162 GAAGAAGGGACTCAAGACCGGCATGTACTAC 5192 >seq46202 Length=175750 Score = 125 bits (138), Expect = 9e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| ||| | || ||||| || || || ||||||||||| || || |||||| | Sbjct 40607 GAGCGTCTCCTGGCTTTTGCTGCAGTAGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 40548 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| |||| | |||||||| ||||||||||| |||||| ||||||| |||||||| ||| Sbjct 40547 ATTTTTTGGTTGAAGAAGCGTGGTCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTCATC 40488 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 40487 AGTCGTGACGAGGG 40474 >seq45735 Length=40545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 176875 GAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACC 176934 |||||| | ||| | ||||||||| || ||| ||| ||||| |||||||||||||| Sbjct 21129 GAGCTGCGCGACGGTGGCATCACGCACGTTCAGCAGCTTACCACGCAGAGGGAAGACACC 21188 Query 176935 GTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACC 176994 ||| || || || ||||| || | ||||| || || || || | ||||| |||||||| Sbjct 21189 GTATTGGTCACGTCCAACGACGGCCAGACCAGCCACTGCAAGAGCCTTCGCTGAATCACC 21248 Query 176995 CTCTGTCA 177002 || |||| Sbjct 21249 TTCCGTCA 21256 >seq46075 Length=65249 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || ||||| || | || ||||| || || || ||||||||||| || || |||||| Sbjct 31971 GCAGAGCGTCTGCTAGCGTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGCTCGTTCTGC 31912 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | | | ||||||||||||||||| || ||||| || || ||||||| ||||| | Sbjct 31911 TCCGTGTTCTGGCTCAAGAAGCGAGGACTTATGCCTGGCCTAAGCTTCTCGAACGAAATG 31852 Query 102297 ATCTCTCGTGACGAGGG 102313 || ||| |||||||| Sbjct 31851 ATTAGTCGCGACGAGGG 31835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620383455707200