Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq45717 230 3e-55 seq45996 134 2e-26 seq46186 107 2e-18 >seq45717 Length=39516 Score = 230 bits (254), Expect = 3e-55 Identities = 1084/1693 (64%), Gaps = 58/1693 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | ||| || Sbjct 5191 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAAAAGTGCATGGACGTGAGCTTA 5132 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||||| ||||||| ||| ||| | || Sbjct 5131 CTGATAGTCGGGTCAGCGATGTGGATGTTCAGCGACTGACTCTGGCAGATATACGCGCCT 5072 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || || | || ||| | | | ||| || | || ||||| || || |||||| Sbjct 5071 CGGTCCGCTGACAAGTCCAGAACAGCCTTCTGTTTGATCTCCCACACCGTTTTGTACTTC 5012 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||| | || || |||||| | ||| ||||| | ||||||||| | |||| || Sbjct 5011 TCCTTAACGTCTTCCGGAATGGTCTTGATCTTTTGGACTGAGCCACCATCATTCAGAATC 4952 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 ||| | || || ||||| |||| || | || || | | || |||||| Sbjct 4951 TGATTGCGTACTTCCGGCGTCCAGATTCCGAGCTCGATTAGTTCCTTCATCAGGTGCTTG 4892 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 ||||| | | || || ||||| || ||| ||| ||| ||||| | |||||| || Sbjct 4891 TTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGACGTGTACGGC 4832 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| | |||| |||||||| |||||||| || ||||| |||||||||||||| || | Sbjct 4831 TCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATGGGGGCAACC 4772 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || || ||| || ||||| | | |||| || || |||| |||||| || Sbjct 4771 AGCAGCGAGTTGCGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCCCAATTCCAA 4712 Query 109894 CGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGC 109952 | ||| ||| || | | || | |||||||||| || | | |||| || Sbjct 4711 AGCCCAG---ATTGAGGTGTGAC-ACCCCACATATCGAACTGGAAGATCCCCTTGCTGGC 4656 Query 109953 AGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTC 110012 || || |||| ||| ||||||| | ||| || |||| | ||| || | ||| Sbjct 4655 TGGCGAGCCCTGGAACGTCTCGTAAGGTCCCAACTCCACGGCAATCTCCATGGACGTCTC 4596 Query 110013 TAGTGCCGCATGATACATAGTCTCAAAAATAT----GAGCA-TTCATGAG---GCGAGAC 110064 | || ||| || || ||||| || || | | || ||| |||| ||| | | Sbjct 4595 CATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGG-C 4537 Query 110065 TCTTCACAGTCGAA-GGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACC 110123 ||| |||| ||| || || |||| | || | || || ||||| ||||| || Sbjct 4536 TCT-------CGAACGGGTAGTTCATCAAGA-TGAAGGCGTCAGCCAGACCTTGAACGCC 4485 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTT 110183 | ||||| || |||||| |||||| || ||||| | ||||||| ||| |||| Sbjct 4484 AATGCCAATAGGACGATGCCGCATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTT 4425 Query 110184 GCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTC 110243 | ||| |||||| ||||| || ||| | ||| | ||| | | ||| Sbjct 4424 GACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCG 4365 Query 110244 GTAATCGAACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 ||| |||||| |||| ||| || | || ||||| || | ||||| | | Sbjct 4364 GTAGTCGAACACGG-CGTCCTCC------ACGAACTTAGGGAGCGCGACGGACGCTAAGT 4312 Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTAT--TCCAAAATTTCCGTACACAAGTTG-- 110358 ||||||| | ||| || | || ||||| |||| | ||| || |||||| Sbjct 4311 TGCACACCGCCACCTCATCA--GGCGATGTATACTCCATCACTTCGCAGCATAAGTTGCT 4254 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 || | |||| |||||||||| || ||||| ||| |||| ||| ||||| || Sbjct 4253 GGAGCG---AATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTA 4197 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||| | || ||||| || |||| | | | ||||| ||| || | || Sbjct 4196 CAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCA--CAGCTGC 4139 Query 110478 GGCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACA-AGTCCT 110533 ||| | | | | ||| || | ||||| ||||||||| ||||| ||| | Sbjct 4138 TGCGCGTTGA-TGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTACAGAGTT-T 4081 Query 110534 CAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGAC 110592 | || || | || | ||| || | || ||| || | || ||||||||||| | Sbjct 4080 CGAACTCGTCGCCCCAGCAC-TCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGACTC 4022 Query 110593 CAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAA 110652 || || || |||| || | ||||||||| || ||||| | ||| | ||| |||| Sbjct 4021 CACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAAC 3962 Query 110653 AGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATG 110712 | ||| ||| || ||| | || ||||| || || |||| || || | Sbjct 3961 AAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAAAC 3902 Query 110713 ATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC- 110769 | || | |||||| || || | |||| |||| ||| ||||| || || |||| Sbjct 3901 ACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGCCC 3842 Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| |||||||| |||||| | || || || | ||||| || ||||| |||| ||| Sbjct 3841 TGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAC 3782 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 || || || || | || | ||| |||| || |||| ||| ||| ||||| Sbjct 3781 GAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCG 3722 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACACT-CTGT-GAGTGTACCATAAATACCAT 110947 || || |||||||| || || || || | || | |||||| | || || || | Sbjct 3721 ATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGT--CGTAGATGCCCT 3664 Query 110948 CAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTC 111007 | ||||| || ||| | || | || || |||||||||| ||| ||||| ||||| | Sbjct 3663 CGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGC 3604 Query 111008 CCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATG 111067 ||||||||||||| ||||| || || || |||| | ||| ||||| | ||| | Sbjct 3603 CCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTTTGCGACATGAGTTCGTACG 3544 Query 111068 TGTCGAGTGCGGA 111080 | ||||||||||| Sbjct 3543 TTTCGAGTGCGGA 3531 >seq45996 Length=56081 Score = 134 bits (148), Expect = 2e-26 Identities = 330/492 (67%), Gaps = 35/492 (7%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || | | || | || |||||||| | ||||| Sbjct 30225 ATCTGTCGGTCGAATCGACCAGGACGCAAGATGGCCTTGTCTAGAATATCTGCGCGGTTG 30166 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| ||| |||| | || ||| || ||||| || || Sbjct 30165 GTACCAGCGAGCACCACAACGCC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 30109 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||| | || | ||||||||||||||| ||||||| ||| | | Sbjct 30108 AGCTGGTTCAGTGTGTTCTCACGCTCATCGTTG---------CCACCTGA-GAAGTTTCC 30059 Query 11674 TT----------AC---CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 || || |||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 30058 TTTGCTTCGAGCACGCGCGACGGCGTCAATCTCATCGATAAAGACGATGCACGGAGCGTT 29999 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 ||| || || | | ||| || ||||| ||||| || || ||||| |||||||| || Sbjct 29998 GGCTCGAGCTTCCTTGAACAGATCACGCACACGAGACGGACCCACACCGACGAACATTTC 29939 Query 11781 AACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 | ||| | | | | || | |||||| ||| || || | | || ||||| | || Sbjct 29938 GATGAAATCCGAGCCGGAGATACTGAA-GAACGGCACGCTCGCTTCGCCAGCCGTAGCCT 29880 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 ||| || || ||||||||||||||||| | || | || || ||||| ||||||| Sbjct 29879 TAGCCAGCAGCGTCTTACCCGTACCAGGCGGGCCGACAAGCAGAGCGCCCTTAGGGATCT 29820 Query 11900 TGGC-ACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAG 11957 |||| ||| ||| | ||||| || || | | | ||||||||||| | |||| | Sbjct 29819 TGGCTCCCAGATCC-GTGAAGCGCTTCTGGTTACGT-AGGAAGTCCACGAACTCCATGAT 29762 Query 11958 TTCCTCCTTGGC 11969 |||| |||||| Sbjct 29761 CTCCTTCTTGGC 29750 >seq46186 Length=107646 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| ||||| ||||| || | | || | | || Sbjct 80455 CCGATAGCGTCAATCTCATCGATGAAGACGATGCACGGAGCCTTC-CGCTTGGCCGACTC 80397 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || |||||||| ||| ||||||| |||| | | | Sbjct 80396 GAACAGGTCACGCACGCGACGGGCGCCAACACCCACGTACATCTCCTCGAACTCCGATCC 80337 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || | ||| || ||||| || |||||||| || ||||| Sbjct 80336 AGAAGAATAGAAGAACGGCACTCCGGCCTCGCCGGCGATAGCACGAGCGAGCAGCGTCTT 80277 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||||||||||| | |||| || || |||| Sbjct 80276 ACCCGTACCAGGCGGGCCAGTCAGCAGCACGCC 80244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588635424628000