Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq39983 109 4e-19 seq44488 96.9 2e-15 seq43815 96.9 2e-15 seq3294 91.5 1e-13 >seq39983 Length=4479 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||| ||| | ||| || || || ||||| ||||| || | || | || Sbjct 248 CAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTC 189 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || |||||||| || || || |||||||| |||| | ||||||||||| Sbjct 188 CTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 129 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||||||| || ||| | ||||| || | ||| || || | ||| ||||| Sbjct 128 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGT 69 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || |||||||| ||||||||||| Sbjct 68 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq44488 Length=18910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| || | || | || || Sbjct 18879 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCA 18820 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| |||| | ||||||||||| | Sbjct 18819 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 18760 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | ||||| || | ||| ||||||| || || || || Sbjct 18759 ATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTG 18700 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTG 34994 ||||| || |||||||| ||||||||||| || |||| |||| Sbjct 18699 CCCGTCAGCGTCTTCACGAAGATCTGCAT-TTTGTAG-CTTG 18660 >seq43815 Length=14243 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || || || || || Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| ||| ||||| ||||| Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCA 5126 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| || ||||| | ||||||| Sbjct 5125 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCA 5071 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 5070 CAAAGATCTGCATGATTC 5053 >seq3294 Length=374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCT-GAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||| ||||| || || |||| | ||||| ||||| || | || | || || Sbjct 354 ACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTC 295 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || |||||||| |||| | ||||||||||| Sbjct 294 AAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 235 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || ||| | ||||| || | ||| || || | ||| ||||| || Sbjct 234 AATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTT 175 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| ||||||||||| Sbjct 174 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324450573605280