Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq44514 113 4e-19 seq12431 89.7 4e-12 seq45376 87.8 1e-11 >seq44514 Length=19118 Score = 113 bits (124), Expect = 4e-19 Identities = 354/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || ||||||||||| ||||| |||| | || || Sbjct 7811 GGTATTGATCTGGGCACGACCTACTCGTGTGTTGGTGTGTGGCAGAATGATCGCGTGGAG 7752 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||| ||||| || ||| | || || || || || || | ||||| || || Sbjct 7751 ATCATTGCCAACGATCAGGGGAACCGCACGACCCCGTCGTACGTGGCGTTCACCGACACG 7692 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | | ||||||||||| || | || | || || | ||| || | Sbjct 7691 GAGCGTCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACGCGCACAACACGGTG 7632 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 ||||||| || || || || ||| | | || | ||| | || || | || || Sbjct 7631 TTTGATGTCAAGCGGTTGATCGGACGTAAGTTCACCGATCCAGAGGTGCAATCGGACATT 7572 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAA---AACCTTATAT--TGAAGCTA 550292 ||||| ||||| || | | || || | | | || |||| | | || || Sbjct 7571 AAGCACTGGCCGTTTAACGTAATTCGTGGTGCCGAAAGCAAACCGCAAGTGGTGGTGCAG 7512 Query 550293 CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 ||| | ||| | ||||| || ||||||| | || || || ||||| | || | Sbjct 7511 TTCAAGGGGGAGAAGA-AAACA-TTCCAACCAGAAGAGATCTCGTCCATGGTGCTGATCA 7454 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | ||| | || ||||| | || || |||| | | ||||||| | || | Sbjct 7453 AGATGCGCGAGGTCGCGGAGGCTTTCATCGGGAAACAAGTGAAGAATGCAGTGGTGACGG 7394 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | || || || || || ||||| || ||||| || |||||||||||||| |||||||| Sbjct 7393 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCGACTAAAGATGCTGGGGCTATTGCTG 7334 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | || || || || ||||| || ||||| || || |||||||| | || ||||| || | Sbjct 7333 GTCTGAACGTGCTGCGTATCATTAATGAGCCGACGGCTGCTGCGATCGCCTATGGGCTCG 7274 Query 550533 ATAA 550536 | || Sbjct 7273 ACAA 7270 >seq12431 Length=625 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550418 GCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTT 550477 || || || || ||||| || ||||| || ||||||||||||||| ||||||||| | Sbjct 2 GCCTACTTCAACGACTCGCAGCGTCAGGCGACTAAAGATGCTGGAGCTATTGCTGGTTTG 61 Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || ||||| || ||||| || || |||||||| | || ||||| || || || Sbjct 62 AACGTGCTGCGTATCATTAATGAGCCGACGGCTGCTGCGATCGCCTATGGGCTCGACAA 120 >seq45376 Length=30652 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||||| || ||||| || ||||||||||||||| |||| Sbjct 20390 ACGGTCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCGACTAAAGATGCTGGAGATATT 20449 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || || || ||||| || |||| || || |||||||| | || ||||| Sbjct 20450 GCTGGTTTGAACGTGCTGCGTATCATTGATGAGCCGACGGCTGCTGCGATCGCCTATGGG 20509 Query 550529 CTTGATAA 550536 || || || Sbjct 20510 CTCGACAA 20517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026849562567400