Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq44985 147 2e-30 >seq44985 Length=24218 Score = 147 bits (162), Expect = 2e-30 Identities = 395/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||||||||| || | || || ||||| || || || | | |||| Sbjct 8416 AGCTGTTTCTGAAGCGGTTCCACATGGTTTAGATACACGTGTGCATCACCGATGACGTGG 8357 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 | |||||| || || | ||| || || || || || | || ||| || || | |||| Sbjct 8356 ATAAACTCGCCAGGCTTTAGGCCTGTCACTTGTGCTACCAGTCGCGTAAGAAGCGCGTAG 8297 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||| || ||||| || || |||||||| |||| | ||| || | || || Sbjct 8296 CTGGCGATGTTGAAAGGTACACCAAGTCCCATGTCGGCCGAGCGCTGATACATTTGGCAA 8237 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | || || | | |||||| ||||| || | |||||||||| || || ||||| Sbjct 8236 GACAATTCCCCATTGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGTGCCATC 8177 Query 30031 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 30089 | | ||| ||| ||||| || | | | || || | ||| || | | || Sbjct 8176 TCGTTGAGATCTGAGGGATTCCACGCCGAGAGCACAATCCGTCGGTCAGTCGGATTCGTA 8117 Query 30090 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 | | | || | ||| | || ||||| ||||| || | || | |||||| || Sbjct 8116 CGCAGCTTGTGAATCAC----CTCAGCAAGCTGGTCCACGCCTTTGCCAGTGTAGTCCGC 8061 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 |||||||||||||| || || || || | |||||| || ||||| || ||||| || Sbjct 8060 ATGCATGTCCGTGTACTTGGCGCCAAAGTGGCGCCACTGAAAGCCGTAAACAGGTCCAAG 8001 Query 30207 GTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 ||| || | |||| |||| |||| || | | |||| | || | || || || Sbjct 8000 GTCACCAACCTCCCGATGCT-GAAGTCCTCGACTATCCAGGTACTCGCGAGATCCATTAC 7942 Query 30266 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30324 |||||||||| | | | |||| | | | | | || | | ||| || || | | Sbjct 7941 CGTCCCAGATGTGAATATCTTTCTGCTGCAAAGTGTGTGCA-CTCGTGTCGCCACTAATG 7883 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 ||||||| |||||||| | || | |||||||||||||||||| || || Sbjct 7882 AACCACAAAAGCTCCTCGGCTACACCTCGCCAAAAGACCCTCTTGGTTGTCAG 7830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408387223950980