Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35973 105 5e-18 seq39983 104 2e-17 seq46143 91.5 1e-13 seq44488 87.8 1e-12 seq43815 87.8 1e-12 seq3294 86.0 5e-12 >seq35973 Length=2546 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| ||| || || || ||||| || || | || Sbjct 382 AGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 441 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||||||| || || ||||| ||||| || || | || | ||| ||| Sbjct 442 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCC 501 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||||| || || | | || || || | |||||| |||| ||| Sbjct 502 TTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTG 561 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| || || |||||||| || || ||||||||||| || Sbjct 562 ATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCATAGT 602 Score = 95.1 bits (104), Expect = 9e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| || || ||||| |||||||| || | || | ||| |||||||| ||| |||| Sbjct 2 TACCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTT 61 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 | || || | | || ||||| | |||||| |||| ||| ||||| || || |||| Sbjct 62 GCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCA 121 Query 48745 AAGTTTTTACAAAAATCTGCAT 48766 |||| || |||||||||||||| Sbjct 122 AAGTCTTCACAAAAATCTGCAT 143 >seq39983 Length=4479 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| |||| || || || ||| ||||| || ||||| || Sbjct 262 CCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 203 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| |||| || | |||||| |||||||| || || ||||| || || | || Sbjct 202 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 143 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || || | | || || |||| |||||| Sbjct 142 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 83 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || ||||||| || || || || |||||||| Sbjct 82 TCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq46143 Length=82526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| || || || ||| || || || ||||| || || ||| | || Sbjct 41661 AGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGG 41602 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| || || | || | ||| ||| Sbjct 41601 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 41542 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || ||| | | || |||| |||||| || | ||| Sbjct 41541 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 41482 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || || ||||||||||| Sbjct 41481 ATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq44488 Length=18910 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || || || ||||| || ||| | ||| Sbjct 18888 AGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGA 18829 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || || ||||| || || | || | ||||||| Sbjct 18828 CCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 18769 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || |||| ||| || || | ||| Sbjct 18768 TTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTG 18709 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||| || || || || |||||||| Sbjct 18708 ATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 >seq43815 Length=14243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || || | || |||| || | |||||| || || || ||| Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || || | || | ||||||||||| ||| || || || ||| | Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCA 5126 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | || |||| |||||| |||| ||| || || || |||||||| || || ||||| Sbjct 5125 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 5066 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 5065 ATCTGCAT 5058 >seq3294 Length=374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||| ||| || ||||| || ||| | ||| |||| || | |||||| |||||||| | Sbjct 334 CTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGA 275 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || ||||| || || | || | |||||||||||| |||||| || || Sbjct 274 TGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGT 215 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || || |||| |||||| || | ||||| || || ||||||| || || || | Sbjct 214 CGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGA 155 Query 48757 AAATCTGCAT 48766 | |||||||| Sbjct 154 AGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380722829761980