Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq45717 251 1e-61 seq46202 223 6e-53 seq46075 149 1e-30 >seq45717 Length=39516 Score = 251 bits (278), Expect = 1e-61 Identities = 732/1106 (66%), Gaps = 52/1106 (5%) Strand=Plus/Minus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||| | |||||| |||||| || ||| || || | ||||| | | | ||| | Sbjct 4907 CTTCATCAGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACAT 4848 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || ||||| |||||||| ||||||||| ||||| || || || ||| |||||| Sbjct 4847 GTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGT 4788 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA- 213071 ||||||||| || ||||| || ||| | | || || | | || | | | | Sbjct 4787 GGGCATGGGGGCAACCAGCAGCGAGTTGCGAAGACCATGTTTG---ATTACGTCATCTTT 4731 Query 213072 -AGCTCTGCCCAGTCCCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCA 213128 || | ||||| | ||| ||||| |||| | || |||||| || Sbjct 4730 CAGTGCGGCCCAATTCCAAAGCCCAGATTGAGGTG--------TGACACCCCACATATCG 4679 Query 213129 AACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCC 213188 ||||| ||||| || ||||| | || ||||||| | | ||| || || |||| Sbjct 4678 AACTGGAAGATCCCCTTGCTGGCTGGCGAGCCCTGGAACGTCTCGTAAGGTCCCAACTCC 4619 Query 213189 TTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTG 213248 ||| | ||| ||||| || || |||||| |||||||||| || || || | | || Sbjct 4618 ACGGCAATCTCCATGGACGTCTCCATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTG 4559 Query 213249 TTGAGCTTCTTG-GCCTCTGGGGACGTGAA-GGGCA--TCATCATGCGTTGGAACACATC 213304 || | |||||| || | ||| | ||| ||| | |||||| | ||| | || Sbjct 4558 TTCAA-TTCTTGAGCTTGCGGGCTCTCGAACGGGTAGTTCATCAAGAT---GAAGGCGTC 4503 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACT 213363 |||||| || || || || ||||| || || | || | || ||| |||||| |||| || Sbjct 4502 AGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCCGCATGTTGGACTTGCGAGC-CT 4444 Query 213364 CCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGG 213423 | | | ||| ||| ||||| ||| |||| ||||||||||||||| || ||| ||| Sbjct 4443 CTGCTACGGGATAATAGTTGACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGA 4384 Query 213424 TGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 || | | || | || | ||||||| |||||| ||| |||| ||| | Sbjct 4383 CCACTTCGTACAACTTGCGGTAGTCGAACACG------GCGTCCTCCACGAACTTAGGGA 4330 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | |||| | || | |||||| || |||||||| | || ||| |||||||| | | Sbjct 4329 GCGCGACGGACGCTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCACTT 4270 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 || ||| | ||||||| | || ||||| |||| |||||| ||||| ||||| ||||| Sbjct 4269 CGCAGCATAAGTTGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGG 4210 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||| ||||| | || || ||||| | ||| | ||| || | Sbjct 4209 CTGCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGA 4150 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT--AGCCTCGTACTG 213721 ||| || | | || |||| | || || || | | | | | |||||||| Sbjct 4149 ACCACAGCTGCTGCGCGTTGA----TGGTCTTAC-GCGCACGTCCTTCTGTCTCGTACTT 4095 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG-- 213779 |||||| || | ||| |||| ||||||| | || || ||||| || | || Sbjct 4094 TTCGTACAGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGG---GGCTTCGTT 4038 Query 213780 -GGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||||| | ||| ||||| | ||| | |||| || | || |||||| || || || | Sbjct 4037 AGGACAGAAGAGACTCCACTTGCCGTTGGCCTCT-ACGCGCTTCATGAAGAGATCAGGCA 3979 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT-CCAGAGTTTTTGCGC 213896 |||| |||||| ||||| ||| | || | | || | | || ||| || ||| Sbjct 3978 CCCAGAGCGCGTAGAACAAGTCGC-GGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGC 3920 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 ||||| || || ||||| | ||| |||||||| ||||||| ||||||||| |||| |||| Sbjct 3919 AGATCCAGGAACTCAAACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCC 3860 Query 213957 ---GGCCTCTTGCCGCCCTGGTCCAC 213979 || || |||||||||||||| Sbjct 3859 TTGCGCTTCCCTCCGCCCTGGTCCAC 3834 >seq46202 Length=175750 Score = 223 bits (246), Expect = 6e-53 Identities = 562/844 (67%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||||| ||||| |||||||| ||||| |||| | || || | ||||| Sbjct 40167 GTACTCGCCCACTCGTTTCTCGAAGAAGTTCGTCTTTCCCTGAAGAGAAATCATGTCCAT 40226 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | || || | | | |||||| | Sbjct 40227 CCAGTCGAACGGGTTCTTAGCGTGGTAGATCTTGGACACACCGAGCGAGTACAGCAGACG 40286 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| || ||| |||| ||||| | |||||||| ||||||||| || || ||| Sbjct 40287 ATCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCAATCAGCTCCAC 40346 Query 48022 GGGCAAAGCCTTT---GTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || |||| | || ||| ||| | || ||| ||| || || | |||||| | Sbjct 40347 CGG--AAGCGAGTCACGTACGAA-CTCGTGTTCAATCGTCACAGCATCGCGCACAATTTC 40403 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | || ||| ||| | | | || || ||| ||||| || | | ||| || || Sbjct 40404 GTGCACTCGGCTCTCCGGGAGCTTAGTGACCAG---CTTGGAGTACAAGAGGCACGCGAA 40460 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 |||| |||||| ||| ||||| || ||||||||| |||| ||||||| |||||||||||| Sbjct 40461 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGACCAGGCAT 40520 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || || | ||| ||||| | ||||||||| |||||||||||||| || Sbjct 40521 GAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 40580 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGG 48317 ||||| || || || ||| | ||| | | || | | | | | | ||| Sbjct 40581 TACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGT-CGCACCACT 40639 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG--GAAGA- 48374 | |||||||| || ||||| ||| || || || ||||| || || || | ||| Sbjct 40640 TGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCACGCAGCAGAT 40699 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| |||||| | || || | ||||||| | ||| | || Sbjct 40700 GGTCCTT---CTCGATGGCGTCCTTGATGTACGTGTCAATGAGCAG---AGAGTAAACCT 40753 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||| ||| | || ||| ||||| Sbjct 40754 CCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGCACCT 40813 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||||||| | ||| || ||| ||||| || || || ||||| ||||| | Sbjct 40814 GCACTTCATTACTGAAATTCATTGCCAGGTTCTCGTTCACAATTCCATCGCTGGCAGCGA 40873 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||||||||| |||||||| | ||| || |||||||||| || || ||||| ||| Sbjct 40874 AGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTCCAGTCCT 40933 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||| | |||| || | || || ||||||||||||| || ||| || || | Sbjct 40934 TGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCTTCTTAT 40993 Query 48672 ACAT 48675 |||| Sbjct 40994 ACAT 40997 >seq46075 Length=65249 Score = 149 bits (164), Expect = 1e-30 Identities = 544/843 (65%), Gaps = 33/843 (4%) Strand=Plus/Plus Query 47843 TAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATG 47902 || || ||||| | ||||| |||||||||||||| |||| | ||||| | ||||| Sbjct 31529 TACTCGCCCACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGTAGTGAGATCATGTCCATC 31588 Query 47903 AAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGA 47962 || ||| ||||| ||| || | | | | |||| | ||| || || Sbjct 31589 CAGTCGAATGGGTTCTTCACGTTGTAGATCTTGGATACACCCAGTGAGTACAGAAGACGA 31648 Query 47963 TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACG 48022 || || || |||| ||||| | ||||||| | ||||||||| ||||| ||| Sbjct 31649 TCTGCCACAAACTCAATGTACTGACACATGAGCGCCGAGTTCATGCCGATGAGCTCCACC 31708 Query 48023 GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTA 48082 || | || | | ||||| | ||| ||| ||| || || | | |||| | Sbjct 31709 GGGAGAGAATCGCACACGAACTCGTGCTCAATCGCCACAGCGTCACGAATGATCTCATGG 31768 Query 48083 ACGCGGGACTCTGAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGT 48140 || || ||||| || | |||||| ||| ||| | || | || ||| || |||| Sbjct 31769 ACACG--ACTCTCCGGCAGCTTGTTGACCAG---CTTCGAGTACATCAGGCACGCGAAGT 31823 Query 48141 CCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGA 48200 || |||||| || ||||| || || || | |||| ||||||| || |||||||| | Sbjct 31824 CCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGAAGCTTAGGCCAGGCATAA 31883 Query 48201 CCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| | | ||| ||||| ||||||||||| || |||| Sbjct 31884 GTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTGAGAAGAAGATTCCTTCCA 31943 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT---CTTGTCTGAGATCCAGG 48317 |||| || ||||| || | |||| || | || || | | || | | | ||| Sbjct 31944 CTGCAGCAAACGCTAGCAGACGCTCTGCGTACGA--CGATACACGTGGGTCACA-CCATT 32000 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 || | ||||||| || || || || ||||| || || || | ||| | Sbjct 32001 TGAGTG----------TTTCTTCTGGACACACGGGATGGTCTCGATAGCTCGAAGGAGGT 32050 Query 48378 --TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTC 48432 |||| | | |||| || ||| | || || | | |||||| | ||| | || Sbjct 32051 GGTCTTTCTC-CACC-GCATCCTTGATGTACGTGTCAATAAGCAGC---GAGTAGACTTC 32105 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| |||||||||||||| || || ||| | || ||| | ||| Sbjct 32106 CGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCTTCAGGGATCTG 32165 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 |||||| | ||| || ||||||||| ||||| || || || ||||| || Sbjct 32166 CACTTCGTTACTGAAGTTCATGGCCAGATTCTCGTTGACGATACCGTCACTGGCAGCGAA 32225 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| || || || || | ||| || ||||| |||| ||||| |||| | | Sbjct 32226 GAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTTTCGCCCAGTCGTT 32285 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | || | | || |||| || || ||||||||||||| || ||| || ||||| Sbjct 32286 GAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCTTCTTGTA 32345 Query 48673 CAT 48675 ||| Sbjct 32346 CAT 32348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930994141158400