Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq45717 143 5e-29 seq46202 134 3e-26 seq46075 122 2e-22 >seq45717 Length=39516 Score = 143 bits (158), Expect = 5e-29 Identities = 646/1010 (64%), Gaps = 43/1010 (4%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || |||||| |||||||||||| ||||| ||||||| | | ||||| || | | | Sbjct 4595 CATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAAT-TCTTGAGCTTGCGGGC 4537 Query 221479 AGT-GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | ||| || || || ||| |||| ||||| || || || || || || | Sbjct 4536 TCTCGAACGGGTAGTTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAA 4477 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 | || | || | | ||||||| | || |||| ||||||||| |||||||||| | Sbjct 4476 TAGGACGATGCCGCATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTA 4417 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||||||||| | || || || || ||||| ||| || ||| ||| | || Sbjct 4416 TGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTACAACTTGCGGTAGTCGA 4357 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAA---AGCGTTTAGGGCAACGCTGG 221714 |||| | |||| | |||| || || | || || ||| | Sbjct 4356 ACAC---------GGCGTCCT---------CCACGAACTTAGGG---AGCGCGACGGACG 4318 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 | | ||| ||||| |||||||| || ||||||| || | || || | || Sbjct 4317 CTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCACTTCGCAGCATAAGT 4258 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 ||||| | |||||||||| || | || || |||||||| ||||| |||||||||| Sbjct 4257 TGCTGGAGCGAATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCTTGT 4198 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 | |||||||| || |||||||||| | |||||| ||| || | ||| || | | Sbjct 4197 ACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCACAGCT-GC 4139 Query 221895 TG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT-TTTCATAC--CCGGTATAGAGC 221950 || ||| | | | |||| ||| | || ||| | || ||| ||| |||| Sbjct 4138 TGCGCGTTGA---TGGTCTTACGCGCA-CGTCCTTCTGTCTCGTACTTTTCGTACAGAG- 4084 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | ||||| ||||| || | ||||| | ||| Sbjct 4083 -TTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGA 4025 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| | |||| | | || | || ||||||||| || || | ||| ||||| | Sbjct 4024 CTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAG 3965 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || | || | || || || || ||||| ||| || | |||||||| |||||| Sbjct 3964 AACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCA 3905 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | ||| |||||||| ||||||| |||| ||| | | ||| ||||| || Sbjct 3904 AACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCG 3845 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| ||||| | | | |||| || | || || | || | | || ||| Sbjct 3844 CCCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTG 3785 Query 222251 GATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC-- 222307 || ||| ||||| ||||| ||||| ||| | | ||| ||| || Sbjct 3784 GA-CGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTT--GTGCATACTG 3728 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 || ||||| || || || ||||||||| |||||| ||| |||||||| |||| Sbjct 3727 ATACCGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATG 3668 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 ||||| || ||||| |||| | || || |||||||| |||| ||| Sbjct 3667 CCCTCGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTG 3618 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 221100 CCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACA 221159 |||| | || ||||||||| || | ||| || || | ||||| | | | ||||| Sbjct 4908 CCTTCATCAGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACA 4849 Query 221160 GGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGG 221219 ||| || ||| |||| ||||| |||||||||||||||||| || |||||| ||| | Sbjct 4848 TGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTG 4789 Query 221220 TGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCC 221256 |||||||||| || |||||||| |||||| || || Sbjct 4788 TGGGCATGGGGGCAACCAGCAGCGAGTTGCGAAGACC 4752 >seq46202 Length=175750 Score = 134 bits (148), Expect = 3e-26 Identities = 371/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||| |||||||| | ||| |||||| ||||| ||| | ||||||| Sbjct 41003 TGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTCGATCTGGTG 40944 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| | || | | |||||| || || |||| | ||| Sbjct 40943 CACGACCTCAAGGACTGGAGCAAGCTTACGGACAACGAGCGTCACTTCATCAAACATGTG 40884 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCAC 25658 | || ||||| || ||| ||||| || ||||||||||| ||| || | || |||| Sbjct 40883 CTTGCCTTCTTCGCTGCCAGCGATGGAATTGTGAACGAGAACCTG-GCAATGAATTTCAG 40825 Query 25659 CAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAA 25717 | |||||||| || | | || || || || ||||| |||||||| |||||||| | Sbjct 40824 TAATGAAGTGCAGGTGCCT-GAAGCTCGTTGCTTTTACGGCTTCCAGATCGCCATCGAGA 40766 Query 25718 ATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGA 25777 | | ||||| ||||| || | ||| | |||||||| | |||| | ||||| Sbjct 40765 ACATTCACTCGGAGGTTTACTCTCTGCTCATTGACACGTACATCAAGGACGCCATCGAGA 40706 Query 25778 GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGG 25837 || | ||| | |||| || ||| ||| || | ||| | ||| || | |||| Sbjct 40705 AGGACCATCTGCTGCGTGCAATTGAGACCATCCCTTGTGTCACCAAGAAAGCTCACTGGG 40646 Query 25838 CCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 | || |||||| | || | | | | | ||| ||||| || | || |||||| Sbjct 40645 CGATCAAGTGGTGCGAC-CCTCGTGTGTCCTCGTACCCGGAGCGTCTCCTGGCTTTTGCT 40587 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAA 25955 || || || |||||||| ||| || || || ||| |||| || ||| | ||| || Sbjct 40586 GCAGTAGAAGGCATCTTCTTCTCGGGCTCTTTCTGC-TCCATTTTTTGGTTGAAGAAGCG 40528 Query 25956 GGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 || |||||| || || ||| || |||||||||||||| | |||||||| | || Sbjct 40527 TGGTCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCA 40468 Query 26016 CAGAGATTTTGCCTGCCT 26033 || || || || ||||| Sbjct 40467 CACGGACTTCGCGTGCCT 40450 >seq46075 Length=65249 Score = 122 bits (134), Expect = 2e-22 Identities = 541/854 (63%), Gaps = 29/854 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||| | ||| |||||||||||||||| | ||| |||||| ||||| ||| | ||| Sbjct 32360 GATGTGTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACTGCCGAGGAGCTGGAT 32301 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATTTTCTC 25590 || | | || | ||| |||| || | || |||| |||| || || || Sbjct 32300 CTAGTGCACGATCTCAACGACTGG---GCGAAACTCACAGACAATGAGCGTCACTTCATC 32244 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 ||| ||||| | || ||||| || ||| ||| ||||| || |||||||||||| | | Sbjct 32243 AAGCACGTGCTCGCCTTCTTCGCTGCCAGTGACGGTATCGTCAACGAGAATCTGGCCATG 32184 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | ||||||||| | || || || || || || |||||||| || Sbjct 32183 AACTTCAGTAACGAAGTGCAGATCCCTGAAGCTCGCTGCTTTTATGGCTTCCAGATCGCT 32124 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 ||||| || | ||||| || || || | |||| | |||||||| | || | Sbjct 32123 ATCGAGAACATCCACTCGGAAGTCTACTCGCTGCTTATTGACACGTACATCAAGGATGCG 32064 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | |||| ||| | || || | || |||||| ||| || | || ||| ||| Sbjct 32063 GTGGAGAAAGACCACCTCCTTCGAGCTATCGAGACCATCCCGTGTGTCCAGAAGAA---- 32008 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCA-GAG-CGCTACGTTTGGCGAGCGGCTGGTAG 25888 | | || ||| || ||| | | | ||| | ||||| ||| ||| Sbjct 32007 ------ACACTCAAATGGTGTGAC--CCACGTGTATCGTCGTACGCAGAGCGTCTGCTAG 31956 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | |||||||| ||||| || ||||| ||| || ||||| ||| || | ||||||||| Sbjct 31955 CGTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGCTCGTTCTGC-TCCGTGTTCTGGCTC 31897 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || | |||| ||||| || || ||| || ||||| | || || | ||||| Sbjct 31896 AAGAAG-CGAGGACTTATGCCTGGCCTAAGCTTCTCGAACGAAATGATTAGTCGCGACGA 31838 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||| | |||| || || || |||||| | ||| || | || || || || || | Sbjct 31837 GGGTATGCACACGGACTTCGCGTGCCTGATGTACTCG---AAGCTGGTCAAC-AAGCTGC 31782 Query 26067 TCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| | ||| | ||||| || ||||||| ||| ||| | ||||| Sbjct 31781 CGGAGAGTCGTGTCCATGAGATCATTCGTGACGCTGTGGCGATTGAGCACGAGTTCGTGT 31722 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| |||||| | || ||||||| Sbjct 31721 GCGATTCTCTCCCGGTGGAGCTCATCGGCATGAACTCGGCGCTCATGTGTCAGTACATTG 31662 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 ||| |||||| || | ||| |||| | ||||| | ||| |||||| | | Sbjct 31661 AGTTTGTGGCAGATCGTCTTCTGTACTCACTGGGTGTATCCAAGATCTACAACGTGAAGA 31602 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| ||||||| ||||| | || || | | || ||||| |||||||| || ||| Sbjct 31601 ACCCATTCGACTGGATGGACATGATCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGC 31542 Query 26306 GGGTCGGCGACTAT 26319 | || ||||| ||| Sbjct 31541 GCGTGGGCGAGTAT 31528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928307695494400