Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq45949 127 3e-24 >seq45949 Length=51796 Score = 127 bits (140), Expect = 3e-24 Identities = 260/381 (68%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||||| || ||||| ||||| || || || |||||| ||||||| || Sbjct 10310 CCCGTGGCAACCACGAAATCCTCAGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCC 10369 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || || |||| || || |||||||| || ||||| || || |||| | | || Sbjct 10370 ACGTAGTCTCGAGCGTGGCCCCAGTCGCGCTTGGCATCGAGGTTGCCTACGAAGAGGCAA 10429 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAAT-GCTCTTGTAATCTTACGAGTTACAAAAGT 47966 || | || | | || | | | |||| || || |||||||| |||||||| Sbjct 10430 CTTTCGATGCCAGC-GCGAATACGCACCACCGCTCGAGTGATTTTACGAGTGACAAAAGT 10488 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 ||||||| ||| || || ||||| ||||| || || ||| ||||||||||| Sbjct 10489 AGGTCCACGTCGAGGACTCTCGTGGTTAAATAGAATCCCGTTAACGGCGTACATTCCGTA 10548 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | ||| |||| ||| |||| ||||||| | | | ||||| || ||||| || || Sbjct 10549 AGCTTCGCGATGGTTTATTACACTCCAGTAAGCGAACTGCTTTGCCACTCCATACGGTGA 10608 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTC-TGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 ||| |||| || || ||| |||| ||| ||||| || || | || ||||| || || | Sbjct 10609 ACGCGGATGAAATGGCGTGCTCTC-GTCTTGTGGGGTGGCTAGTACTTTACCGTACAGCT 10667 Query 48146 CACTGGTGGATGCTTGATAGA 48166 |||| || || ||||| |||| Sbjct 10668 CACTTGTAGACGCTTGGTAGA 10688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665109577863200