Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq45717 154 2e-32 seq46075 123 3e-23 seq46202 98.7 1e-15 >seq45717 Length=39516 Score = 154 bits (170), Expect = 2e-32 Identities = 1102/1740 (63%), Gaps = 50/1740 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| || | || || || | ||||||||| | ||||| || | Sbjct 3477 CCGCAGCAAATGATCCTACGTGTGGCCCTGGGCATCCACAAGAGCGACATCACGTCCGCA 3536 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || || ||||| ||||| ||| | |||| ||||| || || || |||||| Sbjct 3537 CTCGAAACGTACGAACTCATGTCGCAAAAGTTCTTCACGCACGCCACCCCTACTCTCTTC 3596 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 ||||| || || ||| | || ||| |||| ||| ||||| | || | |||| ||| Sbjct 3597 AATGCGGGCACGCCACGTCCCCAGCTGTCTTCTTGTTTCCTCTTGGCTATGCAGGATGAC 3656 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | ||||| | | | || || ||||| || ||||| || Sbjct 3657 TCGATCGAGGGCATCTACGACACTCTAAAGCAATGCGCCTGTATCTCGAAATGGGCGGGC 3716 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 75510 || || || || || || | | | |||| ||| | || || || || || || Sbjct 3717 GGCATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCT-ACATCCGTGGCACGAA 3775 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || || |||| ||||| || ||||| || || ||||||| ||||||||||||||| Sbjct 3776 CGGCTCGTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACAGCGCGCTATGT 3835 Query 75571 AAATCA-AGCG--GGGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | || ||| ||| |||||||| ||| |||| |||||||||| || ||||| || Sbjct 3836 GGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGCACGC 3895 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAG 75687 ||| | | |||||||| || | || ||||| || ||||| || | Sbjct 3896 CGACGTGTTTGAGTTCCTGGATCTGCGTAAGAACCACGGCAACGAACTCCACCGCGCCCG 3955 Query 75688 AGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGG 75747 || | || | | || ||| | || || || ||||||||||| || |||| || Sbjct 3956 CGACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAGCGCGTAGAGGCCAACGG 4015 Query 75748 TCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAGG 75806 | ||| ||| |||||||| || | || || || |||| ||| || | ||| || | Sbjct 4016 CAAGTGGAGTCTCTTCTGTCCTAACGAAGCCCCGGGCCTCTACGAGTGCTG-GGGCGACG 4074 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC--TGTACC 75864 |||| ||| | || ||| |||||| || || || | || | ||| | || Sbjct 4075 AGTTCGAAACTCTGTACGAAAAGTACGAGACAGAAGGACGTGCGCGTAAGACCATCAACG 4134 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 || || | || ||| || || | | | |||| |||||||| ||| | ||| Sbjct 4135 CGCAGCAGCTG--TGGTTCGCCATCTTGGACGCTCAGATCGAGACTGGCGTACCTTTTAT 4192 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 ||| |||||||| || ||| ||| |||||| |||| ||||| || || | Sbjct 4193 GCTGTACAAGGACGCAGCCAACCGCAAGTCGAACCAACAGAACTTGGGGAC---CATTCG 4249 Query 75985 CTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||| | | ||| ||| ||| | | ||||| ||| |||||| ||| || || Sbjct 4250 CTCCAGCAACTTATGCTGCGAAGTGATGGAGTATACATCGCCTGATGAGGTGGCGGTGTG 4309 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| || || || |||| || || |||| || || || ||| | | || || || Sbjct 4310 CAACTTAGCGTCCGTCGCGCTCCCTAAGT---TC-GTGGAG-GACGC-CGTGTTCGACTA 4363 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 || | | ||| | ||| | |||| || || ||| ||||| ||| Sbjct 4364 CCGCAAGTTGTACGAAGTGGTCAAGGTGATTACGCGCAACCTCAACAAGGTCATAGACGT 4423 Query 76162 AAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 || | ||||||||| | ||| || || ||||| || ||||| || | |||||||| Sbjct 4424 CAACTATTATCCCGTAGCAGA-GGCTCGCAAGTCCAACATGCGGCATCGTCCTATTGGCA 4482 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | || ||||||||||| || || | || || ||| |||| | || || Sbjct 4483 TTGGCGTTCAAGGTCTGGCTGACGCCTTCATCTTGATGAACTACCCGTTCGAGAGCCCGC 4542 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG- 76339 |||| | || |||| ||||| || ||||| || || || ||||| || Sbjct 4543 AAGCTCAAGAATTGAACAAGAACATCTTCGAGACCATCTACTTTGCTGCCATGGAGACGT 4602 Query 76340 AGTTGTGAATTGGC-TGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 || |||| | || || || | || ||||| || |||| || || || Sbjct 4603 CCATGGAGATTGCCGTGGAG--TTGGGACCTTACGAGACGTTCCAGGGCTCGCCAGC-CA 4659 Query 76399 CCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAAC--CAAGCTCAACTACG--AC 76453 ||||||| ||| ||||| |||||||||| || | || ||| || || | | Sbjct 4660 GCAAGGGGATCTTCCAGTTCGATATGTGGG-GTGTCACACCTCAATCTGGGCTTTGGAAT 4718 Query 76454 TGGGATGTTCTCAAGGA--ACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 |||| | || || || ||| |||| | | |||||||| ||| || || | Sbjct 4719 TGGGCCGCACTGAAAGATGACGTAATCA---AACATGGTCTTCGCAACTCGCTGCTGGTT 4775 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || ||||| ||||||||||| || |||||| |||| || || || | | || || Sbjct 4776 GCCCCCATGCCCACAGCCTCCACGGCCCAAATCCTGGGCAACAACGAGTCTATCGAGCCG 4835 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| | ||||| ||| | | || || || ||||| ||| ||||||||| Sbjct 4836 TACACGTCCAACATGTACAACCGTCGCGTGCTGGCTGGCGAGTTCACCATCGTCAACAAG 4895 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCA 76688 ||||| | || || || | || | || ||||| | ||| || | | ||| | Sbjct 4896 CACCTGATGAAGGAACTAATCGAGCTCGGAATCTGGACGCCGGAAGTACGCA--ATCAGA 4953 Query 76689 TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGA-TATCCCAGATGATATCAAGAAT 76747 | |||| | ||||| || | ||||| ||| ||| || || || || | ||| | Sbjct 4954 TTCTGAATGATGGTGGCTCAGTCCAAAAGATC-AAGACCATTCCGGAAGACGTTAAGGAG 5012 Query 76748 CTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 ||| || |||||||| ||||| ||| | ||| | ||| || | || || || Sbjct 5013 AAGTACAAAACGGTGTGGGAGATCAAACAGAAGGCTGTTCTGGACTTGTCAGCGGACCGA 5072 Query 76808 GGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC 76866 || ||| | || || ||||| |||| | ||| | || || || Sbjct 5073 GG-CGCGTATATCTGCCAGAGTCAGTCGCTGAACATCCACATCGCTGACCCGACTATCAG 5131 Query 76867 CAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||||| | || ||||| | ||||| ||||| |||| ||||| ||||| |||||||| Sbjct 5132 TAAGCTCACGTCCATGCACTTTTACGCCTGGAAGAAGGGACTCAAGACCGGCATGTACTA 5191 >seq46075 Length=65249 Score = 123 bits (136), Expect = 3e-23 Identities = 320/480 (67%), Gaps = 12/480 (3%) Strand=Plus/Minus Query 65044 AAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGT 65102 ||||||| |||| || || ||| || | ||| ||||| || | |||||||| || Sbjct 32001 AAATGGTGTGACCCACGTGTATCG-TCGTACGCAGAGCGTCTGCTAGCGTTTGCTGCAGT 31943 Query 65103 GGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCT 65162 ||| || ||||||||||| || || |||||| | | | ||| | |||||||| || || Sbjct 31942 GGAAGGAATCTTCTTCTCAGGCTCGTTCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACT 31883 Query 65163 CATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGA 65222 ||||| |||||| ||||||| || ||| | ||| || || |||||| | ||| ||| Sbjct 31882 TATGCCTGGCCTAAGCTTCTCGAACGAAATGATTAGTCGCGACGAGGGTATGCACACGGA 31823 Query 65223 GTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATC 65277 || | |||| | | | | || || || | || || ||| | | || Sbjct 31822 CTTCG-CGTGCCTGATGTACTCGAAGCTG-GTCA---ACAAGCTGCCGGAGAGTCGTGTC 31768 Query 65278 CACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCA 65337 || | ||| | || || || | ||||||| | | |||| | | || | ||||| Sbjct 31767 CATGAGATCATTCGTGACGCTGTGGCGATTGAGCACGAGTTCGTGTGCGATTCTCTCCCG 31708 Query 65338 TGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGAT 65397 | |||||||| |||||||| | | |||| |||||||||||| |||| | ||| Sbjct 31707 GTGGAGCTCATCGGCATGAACTCGGCGCTCATGTGTCAGTACATTGAGTTTGTGGCAGAT 31648 Query 65398 CGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTT 65457 ||||| || | | | || || | || | |||| |||||| ||||| |||| Sbjct 31647 CGTCTTCTGTACTCACTGGGTGTATCCAAGATCTACAACGTGAAGAACCCATTCGACTGG 31588 Query 65458 ATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 ||||| | || || | || ||||| |||||||| |||||||| || || || ||| Sbjct 31587 ATGGACATGATCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGCGCGTGGGCGAGTAT 31528 >seq46202 Length=175750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 325/498 (65%), Gaps = 8/498 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGCG 65081 ||||| || | ||||| || || |||| ||| | || || ||| | | | ||||| Sbjct 40661 AAGAAAGCTCACTGGGCGATCAAGTGGTGCGACCCTCGTGTGTC-CTCGTACCCGGAGCG 40603 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || | || ||||| || || || ||||||||||| || || |||||| | |||| Sbjct 40602 TCTCCTGGCTTTTGCTGCAGTAGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATTTT 40543 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||||||||||||||| ||||||||||| || || ||||||| || || || || || Sbjct 40542 TTGGTTGAAGAAGCGTGGTCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTCATCAGTCG 40483 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGC--GTAATAGA 65259 || ||||| | ||| ||| || | |||| ||||| | | || || | | Sbjct 40482 TGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCTTGTACTCCAAGCTGGTCACTAA 40426 Query 65260 CCCACTACCGAAACTA-TCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 | | || | | | |||| || ||| || || || |||||| | | ||| Sbjct 40425 GCTCCCGGAGAGCCGAGTGCACGAAATTGTGCGCGATGCTGTGACGATTGAACACGAGTT 40366 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | | ||| | || || | || || || |||||||| | |||| | |||| Sbjct 40365 CGTACGTGACTCGCTTCCGGTGGAGCTGATTGGCATGAACTCGGGCCTCATGTGCCAGTA 40306 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACGC 65438 |||||||| ||| | |||||||| || | | || ||| | || | |||| Sbjct 40305 CATTGAGTTCGTGGCTGATCGTCTGCTGTACTCGCTCGGTGTGTCCAAGATCTACCACGC 40246 Query 65439 GAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGA 65498 ||||| || || |||| ||||| | ||| ||| | || ||||| |||||||| || Sbjct 40245 TAAGAACCCGTTCGACTGGATGGACATGATTTCTCTTCAGGGAAAGACGAACTTCTTCGA 40186 Query 65499 GAAGCGAGTTGGGGACTA 65516 ||| ||||| || || || Sbjct 40185 GAAACGAGTGGGCGAGTA 40168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596224633628800