Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq43071 141 3e-28 seq44796 113 1e-19 seq44715 87.8 5e-12 >seq43071 Length=10948 Score = 141 bits (156), Expect = 3e-28 Identities = 207/287 (72%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 302595 ACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACC 302654 ||| ||||| |||||||| | || || |||||||||||||| ||||| ||||||| Sbjct 4449 ACGTTGAATGTAACCAGTCTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACC 4390 Query 302655 ACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCA 302712 ||||||||| |||||||| | ||| | || ||| ||||| || | | || | ||| Sbjct 4389 ACCCATAGCGTGGAAGAAGAACTCCTGTGG-CGTCAAGCCCTTCAGGTACG-AGTTTTCA 4332 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 ||||||||||| |||||| | ||| |||| |||| |||| || | || Sbjct 4331 ACGAAACCACGACTCTCGGGGCCAAGGTCATCCTTGCCGTAGTGCGGCAACGTACGGTGG 4272 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | | | ||||| ||||| |||||||| |||||||||||||| |||| || | ||| ||| Sbjct 4271 TTAAAACCGTACGGGATTCGCTTTCCTTCAACGTTCTGCTGACCCACACAAGCAATAATC 4212 Query 302833 TGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCATA 302877 || || ||||| ||| | | |||||||| || | ||||| || Sbjct 4211 TGGGAGATATT--AATGAAAGAACCCTTGGAACCGGACGTTACCGTA 4167 >seq44796 Length=21875 Score = 113 bits (124), Expect = 1e-19 Identities = 370/567 (65%), Gaps = 20/567 (4%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| |||||||| |||||||| Sbjct 7486 CCGTGCGAGATCAGACAATCGCGCTCCATCTCTCCCATACGCAGACCACCTTCGCGAGCG 7545 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | ||| || |||||||| || | | || |||||| ||||| || | Sbjct 7546 CGACCTTCCATGGGCTGACGCGTCAACATGGTCACAGGACCACGAGAGCGCGAGTGGATC 7605 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT----GCT 251663 || || | |||||||| || |||||||||||||| | ||| ||||||||||| ||| Sbjct 7606 TTGTCGTCGACCATATGTTTCAGACGCTGGTAGAACGTGGGTCCGATGAAGATCTGCGCT 7665 Query 251664 CGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC--A 251721 |||| | ||||| | || | ||||| || ||||| || | | ||| Sbjct 7666 GTGAGGC----GACGACCAGTGTGGCCGCTGTACATGACCTCGTTGCCGT--GTTTCTGG 7719 Query 251722 TAACCAAGTTTCTGTAGCTCTG-AAGCAATATCACCAATCTTGAATTTGCTAAAACTGGT 251780 || || | || || || | || |||||| | | ||| | | || || Sbjct 7720 TAGCCCAAATTGTGCAG-TGTGTCGGCAATAGCTTGGACTGTGACATCCGTGAACGGAGT 7778 Query 251781 GCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTG 251840 | |||| || | ||| ||||| | ||||||| || | || ||| ||| || Sbjct 7779 GGCGTCACCTTCGTCACCAGTTTGAGACGACACTTTACCCAGCAGACACTCGACCAGATG 7838 Query 251841 GGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCC 251900 | | |||||||| |||||||| || || |||| | ||| ||||| | | ||| Sbjct 7839 CCCCACCGTCATACGCGACGGAATAGCGTGAGGGTTGACAACGATATCGGGCGTAATTCC 7898 Query 251901 ATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || | ||||| ||||| || ||||| | || | | ||||| || ||||| || Sbjct 7899 TTCCACCGTGAACGGCATGTC---TTCCTGACGGTACGTCATACCAATCGTACCCTTCTG 7955 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 ||||||||| || ||||| |||||||| |||| |||| | || | ||| || Sbjct 7956 TCCGTGACGCGACGCAAACTTGTCACCAATCTGAGGAACACGAATGTTGCGGAAGCGCAC 8015 Query 252018 CTTACAGAAGTTGTAACCATCACCGTT 252044 ||| ||| ||| | ||||| |||| Sbjct 8016 CTTCGTGAACTTGAAGCCATCCGCGTT 8042 >seq44715 Length=21057 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 233285 ATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGACCTACCCTGG 233344 |||| |||||| ||||||||||| || | |||||||||||||||| ||| | ||| | Sbjct 8961 ATCAGACAATCGCGTTCCATTTCTCCGAGACGCAGACCACCATCACGTGAGCGACCTTCA 8902 Query 233345 ACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATTTTATCTTTA 233404 || ||||| || || || | || ||||| | |||||| | || || || | Sbjct 8901 GTTGGCTGACGCGTCAAGACGGCTCGAGGACCACGTGCACGAGCGTGCATCTTGTCCATC 8842 Query 233405 ACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAA 233445 ||||| ||||||||| || |||||| ||| || ||||| Sbjct 8841 ACCATGTGCTTCAGTTTCTGGTAATAAATCGGTCCCATAAA 8801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470945244509620