Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq45717 122 8e-23 seq35973 100 3e-16 seq39983 98.7 9e-16 seq44488 95.1 1e-14 >seq45717 Length=39516 Score = 122 bits (134), Expect = 8e-23 Identities = 869/1382 (63%), Gaps = 71/1382 (5%) Strand=Plus/Minus Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 || || || |||| || ||||| ||| |||||| ||| | ||||| | || ||| Sbjct 4879 AACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCG 4820 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 ||||| ||||| || || ||||||| || || |||||| || |||| || || || Sbjct 4819 TTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATGGGGGCAACCAGCAGCGAGTTG 4760 Query 138634 CGTAAACCGTGAAGCTTGATT-CGT--TCCTTGAGCGACGACCAGTCCCA-----CAAAT 138685 || | ||| || |||||| ||| || || || | | ||| | ||| || || Sbjct 4759 CGAAGACCATGT---TTGATTACGTCATCTTTCAGTGCGGCCCAATTCCAAAGCCCAGAT 4703 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | |||| | |||||||||| |||| || || ||| || || || ||| | Sbjct 4702 TG--AGGTGTGACACCCCACATATCGAACTGGAAGATCCCCTTGCTGGCTGGCGAGCCCT 4645 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 | ||| ||||| || ||||| || | ||| || || ||| | ||| || Sbjct 4644 GGAACGTCTCGTAAGGTCCCAACTCCACGGCAATCTCCATGGACGTCTCCATGGCAGCAA 4585 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 |||| || || ||| || | || || | | | || | | ||||||| |||| Sbjct 4584 AGTAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAACGGGT 4525 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 | | || |||| ||||| ||||| ||||| ||||| | || | ||| ||||| | Sbjct 4524 AGTTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGATGCC 4465 Query 138926 GCAGATTTGACGCTTTTGCG-GCTTC-GATA--GGATAATAGTTTACATCGATGATTTTG 138981 ||| || ||| ||||| || || | || ||||||||||| || || |||| ||| Sbjct 4464 GCATGTTGGAC----TTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTG 4409 Query 138982 TTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCC 139041 || | || ||| | |||||| | ||| ||| ||| | Sbjct 4408 TTGAGGTTGCGCGTAATCACCTTGACCA----CTT----CGTACAACTTG---------- 4367 Query 139042 CCGTTGTCGTCGACGACGTCG---ACAAATTTGTTGACACAAATCGAGGCTATGTTGCAC 139098 | || |||| ||| |||| || || || || | || |||| ||||||| Sbjct 4366 CGGTAGTCGAACACGGCGTCCTCCACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCAC 4307 Query 139099 ACCGCCACTTCGTCGGGGTCGCTGTATTCGACA--ATTTCGGCACACAAATTACTACACT 139156 |||||||| || || || || ||||| | || | |||| || || || || | Sbjct 4306 ACCGCCACCTCATCAGG--CGATGTATACTCCATCACTTCGCAGCATAAGTTGCTGGAGC 4249 Query 139157 TGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATAT 139216 || || || || || ||||| || || ||||| || || ||||| |||||| Sbjct 4248 GAATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTACAGCATAA 4189 Query 139217 ACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA 139276 | ||| |||||| || | || | || | ||| ||| | | || | | Sbjct 4188 AAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCACAGCTGCTGCGCGTTGA 4129 Query 139277 TT---TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTA--GAGTTCGTCGAA-TC 139330 | | |||| | | || | || ||||||||||||||| ||||| ||||| || Sbjct 4128 TGGTCTTACGCGC---ACGTCCTTCTGTCTCGTACTTTTCGTACAGAGTT--TCGAACTC 4074 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTT-GTCAGGACACATGAGCGACCATACG 139389 || | || || || | || | || ||| || |||||| | ||| ||| | Sbjct 4073 GT-CGCCCCAGCACTCGTAGAGGCC-CGGGGCTTCGTTAGGACAGAAGAGACTCCACTTG 4016 Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 ||||| |||| |||||| ||||||| ||||| || | ||| | ||| | | ||| ||| Sbjct 4015 CCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCG 3956 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATG----TTACGTTTCATGTTAAGGAAATCAAAAAC 139505 || || | ||| | || || ||||| || | ||||| ||||| || Sbjct 3955 CGGGCGCGGTGGAGTTC-GTTGCCGTGGTTCTTACG---CAGATCCAGGAACTCAAACAC 3900 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TG 139562 ||| |||||||| || |||| |||||||| | | ||| || || || || || || Sbjct 3899 GTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGCCCTG 3840 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 || || | || | | | || || || |||| ||| || | || | | | Sbjct 3839 GTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGACGA 3780 Query 139623 TCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 ||||| |||| ||||||| ||||| || |||| || || | | |||| ||||| Sbjct 3779 GCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGAT 3720 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTAT 139742 ||||| | |||| || || | |||| | || || ||||| || || || Sbjct 3719 GCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATGCCCTCGAT 3660 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 ||| |||||||| | | || || || || || || || || || |||||| || Sbjct 3659 CGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGCCCGC 3600 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || |||||||| | ||||||||||| | | || |||||| | |||||||||||| Sbjct 3599 ATTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTTTGCGACATGAGTTCGTACGTTTC 3540 Query 139863 GA 139864 || Sbjct 3539 GA 3538 >seq35973 Length=2546 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || ||||| || || || | | Sbjct 371 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 312 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||| || || || || ||||| || ||||| || ||| Sbjct 311 GACTCGATCGACAACGTCAAGCAAAAAATTCAGGATAAGGAAGGCATCCCTCCTGACCAA 252 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 251 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACGCTGAGCGACTACAAC 192 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || ||||| | || |||| || ||| Sbjct 191 ATCCAGAAGGAATCAACGCTTCATCTGGTGCTTCGCCTGCGTGGTGGC 144 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || | ||||| || || || ||||| || || || | Sbjct 602 ACTATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 543 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || ||||| || || ||||| ||||| || ||||| || Sbjct 542 TCGGACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGAC 483 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| || || || ||||||||||| | | || || || Sbjct 482 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 423 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| | || |||| || ||| Sbjct 422 AACATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 372 >seq39983 Length=4479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || ||||| || || || || | | Sbjct 36 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCG 95 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || || || || Sbjct 96 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 155 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| ||||| | | || || || ||| Sbjct 156 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAAC 215 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| |||||||| ||| |||| |||| | ||||| || Sbjct 216 ATCCAAAAGGAGTCGACACTCCACCTGGTTCTGCGTCTTCGCGGCGG 262 >seq44488 Length=18910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || ||||| |||||||| ||||| | | Sbjct 18671 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAGCCGTCG 18730 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||| || ||||| || || || || || || || Sbjct 18731 GACTCGATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 18790 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| ||||| | | || || || ||| Sbjct 18791 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAAC 18850 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| | || |||| || || Sbjct 18851 ATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGG 18897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449637446712800