Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq46143 125 5e-24 seq43815 123 2e-23 seq39983 116 2e-21 seq35973 113 3e-20 seq39238 109 4e-19 seq3294 107 1e-18 seq44488 98.7 6e-16 >seq46143 Length=82526 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| | ||| ||||||||| ||||| |||||||| || |||| |||| || Sbjct 41652 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCG 41593 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| |||||||||||||| || |||||||| |||| | || |||||||| | Sbjct 41592 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 41533 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 ||||| || ||||| || | || || || | ||| || || | || ||||| Sbjct 41532 ATTTTCTGCTTGAC--AT--TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGT 41477 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || || |||||||| Sbjct 41476 TTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq43815 Length=14243 Score = 123 bits (136), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| || ||||||| Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGAC--AT- 5131 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| | |||||| Sbjct 5130 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTC 5072 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 5071 ACAAAGATCTGCATGAT 5055 >seq39983 Length=4479 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || |||||| || ||||| ||||| || | || | || Sbjct 248 CAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTC 189 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 188 CTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 129 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || |||| ||| ||||| Sbjct 128 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGT 69 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || ||||| || |||||||||||| Sbjct 68 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq35973 Length=2546 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 388 AGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 447 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || |||||||| | || | || |||||||| Sbjct 448 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 507 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||||| |||||| | ||||| || | ||| || || | || || ||| Sbjct 508 TGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 567 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || || |||||||| Sbjct 568 TTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| || |||||||| ||||| ||||| || | || | || Sbjct 160 AGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCC 219 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || || ||||| | || | || ||||| || Sbjct 220 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCC 279 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||||| |||||| | ||||| || | ||| || || | || || ||| Sbjct 280 TGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 339 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| ||||||||||||||| Sbjct 340 TTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 >seq39238 Length=3815 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 3577 AGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 3636 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || |||||||| | || | || |||||||| Sbjct 3637 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 3696 Query 34886 T-TTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | | |||||||| |||||| | ||||| || | ||| || || | || || || Sbjct 3697 TGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGT 3756 Query 34945 CTTTCCCG-TGAGGGTCTTTAC-AAAGATCTGCATG 34978 ||| || | | | ||||| || ||||||||||||| Sbjct 3757 CTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCATG 3792 >seq3294 Length=374 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCT-GAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||||||| || |||||||| | ||||| ||||| || | || | || Sbjct 357 AGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTC 298 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 297 CTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 238 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | ||||| || | ||| || |||| ||| ||||| Sbjct 237 CTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGT 178 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || ||||| || |||||||||||| Sbjct 177 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 >seq44488 Length=18910 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || | || | || Sbjct 18882 AGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCC 18823 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || |||||||| |||| | ||||||||||| Sbjct 18822 TCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 18763 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | ||||| || | ||| ||||| | || || ||| Sbjct 18762 TGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTC 18703 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| || ||||||||||| Sbjct 18702 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325509176434940