Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq35973 95.1 1e-14 seq46143 91.5 1e-13 seq39238 86.0 5e-12 >seq35973 Length=2546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || ||||| || ||||| || || || | || |||| || Sbjct 599 ATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 540 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || ||||| ||| || || |||||| | || || ||| Sbjct 539 GACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 480 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||||||||||| | || || ||||||||| Sbjct 479 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 420 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||||||| | ||| ||||| Sbjct 419 ATCCAGAAGGAGTCTACGCTTCACCTGGTG 390 >seq46143 Length=82526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| ||||| || | || ||||||||||| || |||| |||| | Sbjct 41441 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAGCCG 41500 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | | | | | || || || || || || || |||||| | || || Sbjct 41501 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGAC 41560 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||| | | || || |||||||| Sbjct 41561 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGACTAC 41620 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| |||||||| | |||| || || Sbjct 41621 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGTTGCGTCTGCGTGGTGG 41670 >seq39238 Length=3815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 107556 ATGCAAAT-TTTTGTCAAAACTTT-AACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 ||||| || |||||| || ||||| ||| ||||| || || || | || |||| || Sbjct 3791 ATGCAGATCTTTTGTGAAGACTTTTAACTGGCAAGACGATCACGCTGGACGTGGAGCCTT 3732 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCG-ATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || ||||| ||| | | | || |||||| | || || Sbjct 3731 CAGACTCGATCGACAACGTCAAGCAAAAAATTACAGGACAAGGAAGGCATCCCTCCTGAC 3672 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || ||||| ||||||||||||| | || || |||||| Sbjct 3671 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 3612 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| ||| | ||| ||||| Sbjct 3611 AACATCCAGAAGGAGTCAACGCTTCACCTGGTG 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398651915753140