Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq46143 109 4e-19 seq39238 89.7 4e-13 seq44488 82.4 6e-11 >seq46143 Length=82526 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| ||||| || || || || || || || ||||| || |||| Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||| || ||||| || | |||| | ||||| || ||||| Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || |||||| | || | |||| || | || || Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 41491 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || |||||||| || | ||| || || || ||||||||||| Sbjct 41490 TCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq39238 Length=3815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| |||||||| || || || || ||||| || || | ||||| Sbjct 3574 CGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 3633 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | |||| | ||||| || || || || || || ||| Sbjct 3634 TCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 3693 Query 29692 TCTTGTAATTTTT-GTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || |||||||||| | ||||| | || | | ||| ||| | || || || || || || Sbjct 3694 TCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGAT 3753 Query 29751 AGTTTTGCCAGTT-AAGGTTTTAAC-AAATATCTGCAT 29786 || ||||||||| || || || || ||| |||||||| Sbjct 3754 CGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 >seq44488 Length=18910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| || || || || || ||||| || || | || ||| Sbjct 18885 CGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCG 18826 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | || | | ||||| || ||||| || ||||| ||| Sbjct 18825 TCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 18766 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || ||| | || | | ||| || | ||||| || || || || Sbjct 18765 TCCTG-AATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGAT 18707 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| ||||| || | || || || || ||||||||||| Sbjct 18706 AGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTT 18668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385002015822660