Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq35973 136 4e-27 seq39238 111 2e-19 >seq35973 Length=2546 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||| || || || |||||||| ||||||| |||| ||| || || || Sbjct 397 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 456 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 |||||||| |||||||||| ||||| || ||||| |||||||| ||||| ||||||| Sbjct 457 TTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTT 516 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | || ||| | || || || || | || | ||||||||||||| Sbjct 517 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 576 Query 137389 AATGTTTTTACGAATATTTGCATAG 137413 || || || ||||| || ||||||| Sbjct 577 AAAGTCTTCACGAAAATCTGCATAG 601 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| || ||||| || || |||||||| ||||||| || | ||| || || || Sbjct 168 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTCCAGCTG 227 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 || ||||| |||||||||| || || || ||||| |||||||| || || |||||| Sbjct 228 CTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGAATTTT 287 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||| || | | || | || ||| | || || || || | || | |||||||||||| Sbjct 288 TTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGT 347 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 ||| || || || || || ||||| Sbjct 348 CAAAGTCTTCACAAAGATCTGCAT 371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 ||||||| |||||||||| || || || ||||| |||||||| ||||| |||||||| Sbjct 2 TACCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTT 61 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 | || | | || | || ||||| || || || || | || | |||||||||||||| Sbjct 62 GCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCA 121 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 | || || || || || ||||| Sbjct 122 AAGTCTTCACAAAAATCTGCAT 143 >seq39238 Length=3815 Score = 111 bits (122), Expect = 2e-19 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||||||| |||| ||| || || || Sbjct 3586 TGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 3645 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTT 137327 |||||||| |||||||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 3646 TTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTAATTTT 3705 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||| || | | || | || ||||| || || || || | || | ||||||||| || Sbjct 3706 TTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGT 3765 Query 137388 CAA 137390 || Sbjct 3766 TAA 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488261499432000