Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq35973 118 2e-21 seq39238 87.8 4e-12 >seq35973 Length=2546 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || || || || || | | ||||| || || || Sbjct 169 TGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCCTCCAGCTGC 228 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 229 TTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGAATTTTT 288 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || |||| || ||| || || |||| || ||||||||||| ||| Sbjct 289 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 348 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 349 AAAGTCTTCACAAAGATCTGCAT 371 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || ||||| || ||||| || || || || || | | ||| Sbjct 385 CGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 444 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || |||||||| Sbjct 445 TCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 504 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| ||| || || || || |||| || ||| || || |||| || ||| Sbjct 505 TCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 564 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || |||||||| Sbjct 565 GTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || | ||||| || ||||| || |||||||| || ||||| ||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || |||| || ||| || || |||| || ||||||||||| ||||| Sbjct 64 TTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAA 123 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 124 GTCTTCACAAAAATCTGCAT 143 >seq39238 Length=3815 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | ||| || || || || ||||| || || || || Sbjct 3560 TACCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGC 3619 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || |||| Sbjct 3620 TCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAG 3679 Query 82702 GTATTCCTTCCTTATCTTG-AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || || ||| ||| || || || || |||| || ||| || Sbjct 3680 GGATGCCTTCCTTGTCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCC 3739 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTG-TCAACGTCTTTAC-AAATATCTGCAT 82810 || |||| || ||||||||||| | | || ||||| || ||| |||||||| Sbjct 3740 ACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981245264882140