Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq46143 93.3 1e-13 seq45717 91.5 3e-13 >seq46143 Length=82526 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || || || || ||||| ||||| | || ||||| Sbjct 41441 AAAATG---CAGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAG 41497 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||| | || || ||||| || || || || || ||||| || ||| Sbjct 41498 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCT 41557 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| | || ||||| | ||| || | || Sbjct 41558 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGAC 41617 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||||| ||||| || || ||||| || ||| | || || Sbjct 41618 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGTTGCGTCTGCG 41664 >seq45717 Length=39516 Score = 91.5 bits (100), Expect = 3e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||| | || || || | ||| ||| ||||| |||| ||| | | Sbjct 4207 GCGTCCTTGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAAC 4148 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | ||| | | ||| | ||||||| | ||||| | || || Sbjct 4147 CACAGCTGCTGCGCGTTGATGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTAC 4088 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||||| || | || | |||| || || || ||||| || ||||| ||| Sbjct 4087 AGAGTTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAG 4028 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 |||||||| || || | || ||| || | |||||||||||| || | ||| | |||| Sbjct 4027 AGACTCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCG 3968 Query 173347 TAGAACAA 173354 |||||||| Sbjct 3967 TAGAACAA 3960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181120327425460