Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq35973 118 1e-21 seq46143 107 2e-18 seq39238 104 2e-17 seq39983 102 8e-17 seq44488 89.7 5e-13 seq3294 86.0 6e-12 >seq35973 Length=2546 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| ||| | |||| || || || |||||||||||||||| || Sbjct 150 ACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT 209 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || || | |||| ||||||||||| || ||||| ||||| Sbjct 210 ACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCC 269 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||||||||| || | | || | | || | |||||||| || | Sbjct 270 TTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 329 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||| ||| || | || ||||||||| Sbjct 330 CGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| || || |||||||||||||||| || Sbjct 378 ACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 437 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| ||||| | |||| |||||||| || || ||||| ||||| Sbjct 438 GCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 497 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||||||| || | | || | | || | |||||||| || | Sbjct 498 TTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 557 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || |||| ||| || | |||||||||||| Sbjct 558 CGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 >seq46143 Length=82526 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || ||||||||||| || || Sbjct 41665 ACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 41606 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| |||| |||||||| || || || || ||||| Sbjct 41605 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 41546 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| || || | | || | | || | ||||||||| |||| Sbjct 41545 TTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 41486 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||||| || || || || || | |||||||||||| Sbjct 41485 CGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq39238 Length=3815 Score = 104 bits (114), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | ||||||| || || |||||||||||||||| || Sbjct 3567 ACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 3626 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| ||||| | |||| |||||||| || || ||||| ||||| Sbjct 3627 GCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 3686 Query 132022 TTCTTTAT-CGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||| || | | ||||||||||| || | | || | | || | |||||||| || | Sbjct 3687 TTCCTTGTCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCA 3746 Query 132081 CCGTCAGCGTTTTACCAG-TCAGAGTTTTTATGAAA-ATCTGCATG 132124 ||| | ||| || |||| | | ||| || | ||| ||||||||| Sbjct 3747 GCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCATG 3792 >seq39983 Length=4479 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| ||||| |||||||||||||||| ||||| Sbjct 250 CGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCG 191 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | |||| || ||||| || || || || ||||| || || Sbjct 190 TCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 131 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || |||| | || | | || | ||||||||| || | || | Sbjct 130 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATG 71 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| || || | ||| ||||||||| Sbjct 70 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq44488 Length=18910 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| || || |||||||||||||||| || Sbjct 18892 ACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT 18833 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || |||| | |||| || ||||| || || || || ||||| Sbjct 18832 ACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCC 18773 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || |||| | || | | || | |||||| || |||| Sbjct 18772 CTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAG 18713 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | ||| |||||||| Sbjct 18712 CGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 >seq3294 Length=374 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTT-TTGAATGTTGTAGTCGCTCATGG 131960 ||||| ||| | |||| || | | ||||| || ||| |||||||||||||||| | Sbjct 367 ACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAG 308 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 |||| || || ||||| || |||| | |||| || ||||| || || || || |||| Sbjct 307 TACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGC 248 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 | || || || ||| || |||| | || | | || | ||||||||| || | Sbjct 247 CCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAA 188 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 187 GGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476335599573600