Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq35973 138 1e-27 seq39238 116 3e-21 seq43815 113 4e-20 seq39983 111 1e-19 seq46143 109 5e-19 seq44488 107 2e-18 seq3294 96.9 3e-15 >seq35973 Length=2546 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | |||| |||||| || |||||||| ||| | Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 432 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||||||||| || || |||| ||||||||||| | ||| Sbjct 433 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 492 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| || |||||||| | |||| | | || ||| | ||||| Sbjct 493 ATGCCTTCCTTGTCCTGAATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 551 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || || |||||||| ||||| || |||||||| Sbjct 552 GTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | ||| ||||| || |||||||| ||| | Sbjct 145 CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTC 204 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||| ||||| | ||| Sbjct 205 AGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGG 264 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||| ||| || |||||||| | |||| | | || ||| | ||||| Sbjct 265 ATGCCTTCCTTATCCTGAATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 323 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || || |||||||| |||||||| |||||||| Sbjct 324 GTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 >seq39238 Length=3815 Score = 116 bits (128), Expect = 3e-21 Identities = 174/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| || || ||||| | | | ||||| || | ||| |||||| || ||||||| Sbjct 3554 TTTAGTTACCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGT 3613 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| || || || |||| |||||||||||||| || || |||| |||||||||| Sbjct 3614 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGT 3673 Query 35622 CCGAAGGAACGCTCTCCTTGTCC-ATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCT 35679 | | ||| | || ||||||||| | || |||||||| | |||| | | || ||| Sbjct 3674 CAGGAGGGATGCCTTCCTTGTCCTGTAATTTTTTGCTTGA-CGTTGTCGATCGAGTCTGA 3732 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCG-TCAAAGTTTTCAC-AAATATCTGCAT 35736 | ||||| |||| ||||||||| || || | | ||||| ||||| ||| |||||||| Sbjct 3733 AGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 >seq43815 Length=14243 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | | |||||||||| || || ||||| | | ||| Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACA-TTG 5129 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | ||||| || ||||| |||| |||||| || || |||||||| || |||||| Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5068 AAGATCTGCAT 5058 >seq39983 Length=4479 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||| || || || |||| || |||||||| || ||||| Sbjct 227 CTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 168 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||||||| || Sbjct 167 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGT 109 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| || | || || || || ||||||| || |||| Sbjct 108 TGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCA 49 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 48 CGAAGATCTGCAT 36 >seq46143 Length=82526 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||| || | || |||||| || |||||||| || | | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || |||| ||||||||||| | || Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCAC 35688 | || ||||||||| ||| || ||||| | | ||| || | |||| || ||||| Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACA-TTGTCAATGCTGTCCGACGGCTCCAC 41492 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | |||||| ||||| ||||| | || || || || ||||||||| Sbjct 41491 GTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 41443 >seq44488 Length=18910 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| || || || |||| || |||||||| || ||||| Sbjct 18862 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 18803 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||||| | | Sbjct 18802 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGACTTCACATT 18743 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || || || || | |||||| || || ||||||| || ||||| Sbjct 18742 GTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCAC 18683 Query 35725 AAATATCTGCATTCTGT 35741 || ||||||||| ||| Sbjct 18682 GAAGATCTGCATTTTGT 18666 >seq3294 Length=374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 35545 CTCCTT-TTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 |||||| ||| |||||||| ||| || || || |||| || |||||||| || |||| Sbjct 337 CTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAA 278 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | || | ||||||||||| | || | || |||||||||| ||||| ||||| | Sbjct 277 AGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGACTTCA-CG 219 Query 35664 TTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 ||| | | || ||| || ||||| || | || || || || ||||||| || ||| Sbjct 218 TTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTC 159 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 158 ACGAAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450532928600800