Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq46143 161 1e-34 seq35973 150 2e-31 seq39983 136 4e-27 seq39238 127 2e-24 seq43815 122 9e-23 seq3294 116 4e-21 seq44488 114 1e-20 >seq46143 Length=82526 Score = 161 bits (178), Expect = 1e-34 Identities = 173/224 (77%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || || || ||||| || ||||||||||| | || | ||| Sbjct 41661 AGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC--CGACAGAGTGC 41604 Query 134556 GAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || |||||||| ||||| || || |||| ||||||||| || ||||| ||||||| Sbjct 41603 GGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTT 41544 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || || ||||| || ||||| ||| |||| |||| |||| ||||||||||| Sbjct 41543 CCTTGTCCTGGATTTTCTGCTTGACATTGTC-AATGCTGTCCGACGGCTCCACGTCGAGC 41485 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || |||||||| || || | || || |||||||| |||||||| Sbjct 41484 GTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq35973 Length=2546 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 382 AGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 441 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || |||| ||||||||| || || || |||||||| Sbjct 442 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCC 501 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||||||||| ||||| ||| | | ||| || | |||||||| || || Sbjct 502 TTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTG 561 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || |||||||| ||||| Sbjct 562 ATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || ||||| |||||||| || ||||||||||||| | || | Sbjct 154 AGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGG 213 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||| || || || || |||||||| Sbjct 214 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCC 273 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||||||||| ||||| ||| | | ||| || | |||||||| || || Sbjct 274 TTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTG 333 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || || || || ||||| Sbjct 334 ATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || |||| |||||| || || || || |||||||| || || ||||||||||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| ||| | | ||| || | |||||||| || || || || || ||||| ||| Sbjct 64 TTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAA 123 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| Sbjct 124 GTCTTCACAAAAATCTGCAT 143 >seq39983 Length=4479 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| || ||||| || || || |||||||| |||||||||||| Sbjct 265 TTTCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCG 206 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | || || ||| || ||||| ||||| ||||| || | |||||||| || ||| Sbjct 205 CTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGC 146 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || ||||| || || || || ||| | | ||| |||| ||| Sbjct 145 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 86 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| || || || | || || ||||| || ||||| Sbjct 85 ACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq39238 Length=3815 Score = 127 bits (140), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 3571 AGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 3630 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || |||| ||||||||| || || || |||||||| Sbjct 3631 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCC 3690 Query 134616 TTTTCTTG-AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || ||||||||| ||||| ||| | | ||| || | |||||||| || || Sbjct 3691 TTGTCCTGTAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGT 3750 Query 134675 AATGGTTTTACCGGTT-AAAGTTTTAACGAAA-ATTTGCAT 134713 || || || || ||| ||||| || || ||| || ||||| Sbjct 3751 GATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 >seq43815 Length=14243 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || ||||| || || || || || |||||||| || ||||| || Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT 5128 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || || || || || Sbjct 5127 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 5068 AAGATCTGCAT 5058 >seq3294 Length=374 Score = 116 bits (128), Expect = 4e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTT-TTGAATGTTGTAGTCGCCAACGGTGTG 134554 || || | ||| ||||| || || || ||||| ||| ||||||||||||| | || | Sbjct 363 AGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACG 304 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 303 ACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTC 244 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || ||| | | ||| |||| |||||||| || || Sbjct 243 CTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGT 184 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || || | || || ||||| || ||||| Sbjct 183 AATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || ||||||||||||| | || || Sbjct 134 AGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGA 75 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 74 CCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 15 Query 134616 TTTTCTTGAATTTT 134629 || || ||||| || Sbjct 14 TTGTCCTGAATCTT 1 >seq44488 Length=18910 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || ||||||||||||| | || || Sbjct 18888 AGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGA 18829 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 18828 CCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 18769 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | | ||| |||| || || ||||| || Sbjct 18768 TTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTG 18709 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || || || || || | || || ||||| || |||||||||| Sbjct 18708 ATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTTGT 18666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505106153375200