Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq46202 161 1e-34 seq46075 147 3e-30 >seq46202 Length=175750 Score = 161 bits (178), Expect = 1e-34 Identities = 374/556 (67%), Gaps = 11/556 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || | |||||| || | ||| || | ||||| || || |||| Sbjct 40452 GCACGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAG 40511 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 |||||||| ||||||||||| || | |||||| |||| |||| ||||| || || |||| Sbjct 40512 ACCAGGCATGAGACCACGCTTCTTCAACCAAAAAATGG-AGCAGAAAGAGCCCGAGAAGA 40570 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---T 39791 |||||||||||||||| ||||| || | || | ||| ||| | || | | Sbjct 40571 AGATGCCTTCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAGGACACACGAGGGT 40630 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||| ||||| | ||||||||| | |||||||| || || || || ||| Sbjct 40631 CGCACCACTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCAC 40690 Query 39852 TAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | |||| | || || || | || || | || || || || | |||| || Sbjct 40691 GCAGCAGATGGTCCTTCTCGATGGC-GTCCTTGATGTACGTGTCAATGAGCAGAGAGTAA 40749 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 40750 ACCTCCGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGC 40809 Query 39971 ATTTGTACCTCTGAAC--AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || || || || ||| || || |||| || || ||||| |||||||| || | Sbjct 40810 ACCTGCACTTCATTACTGAAATTCATT--GCCAGGTTCTCGTTCACAATTCCATCGCTGG 40867 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || || || || | |||||||| || || | || | | || | || ||| Sbjct 40868 CAGCGAAGAAGGCAAGCACATGTTTGATGAAGTGACGCTCGTTGTCCGTAAGCTTGCTCC 40927 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| |||| || | | ||| | || || || ||||| || || |||||||||| Sbjct 40928 AGTCCTTGAGGTCGTGCACCAGATCGAGCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCCT 40987 Query 40149 TTTTGTACATGTTCCA 40164 | || ||||| | ||| Sbjct 40988 TCTTATACATCTGCCA 41003 >seq46075 Length=65249 Score = 147 bits (162), Expect = 3e-30 Identities = 374/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| |||||||| || | ||||| || | |||||| | |||||| || | Sbjct 31806 ACATCAGGCACGCGAAGTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGA 31865 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || | || |||| || || || Sbjct 31866 AGCTTAGGCCAGGCATAAGTCCTCGCTTCTTGAGCCAGAACACGG-AGCAGAACGAGCCT 31924 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || |||||||| ||||| ||||| ||||| || | || | |||| |||| | || Sbjct 31925 GAGAAGAAGATTCCTTCCACTGCAGCAAACGCTAGCAGACGCTCTGCGTACGACGATACA 31984 Query 39788 T-TATGTATC--CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || | || || ||| |||||||| ||||| || || || || Sbjct 31985 CGTGGGTCACACCATTTGAGTG----------TTTCTTCTGGACACACGGGATGGTCTCG 32034 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 ||||| || ||| | | ||| || | ||| || | || || || || | ||| Sbjct 32035 ATAGCTCGAAGGAGGTGGTCTTTCTCCACCGCATCCTTGATGTACGTGTCAATAAGCAGC 32094 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || | ||| || |||||||| || || || ||||| || || ||||| || | ||| Sbjct 32095 GAGTAGACTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCATAAAAGCAGCGAGCT 32154 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 |||| || || || || || || | |||| ||| || || || || || ||| Sbjct 32155 TCAGGGATCTGCACTTCGTTACTGAAGTTCATGGCCAGATTCTCGTTGACGATACCGTCA 32214 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || || | || || || || || | |||| | ||| | ||| Sbjct 32215 CTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCTGTGAGTTTC 32274 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||| |||| ||| | || ||| | || || || ||||| || || |||||| Sbjct 32275 GCCCAGTCGTTGAGATCGTGCACTAGATCCAGCTCCTCGGCAGTCCAGAAGGAGGCCTCT 32334 Query 40145 GCCTTTTTGTACATGTTCCATATATC 40170 ||||| |||||||| | ||| | ||| Sbjct 32335 GCCTTCTTGTACATCTGCCACACATC 32360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686511594986400