Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq44985 98.7 8e-16 >seq44985 Length=24218 Score = 98.7 bits (108), Expect = 8e-16 Identities = 265/396 (67%), Gaps = 16/396 (4%) Strand=Plus/Plus Query 40844 AGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACA 40903 |||| | || || |||| | ||||| ||||| |||||||| || ||||||| ||| || Sbjct 7973 AGGACTTCAGCATCGGGAGGTTGGTGACCTTGGACCTGTTTACGGCTTTCAGTGGCGCCA 8032 Query 40904 TTTTGGAGCAAAATATGAC--ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAA 40961 ||||| || || || || || ||| | | || || || ||||| |||| || Sbjct 8033 CTTTGGCGCCAAGTAC-ACGGAC-ATGCATGCGGACTACACTGGCAAAGGCGTGGACCAG 8090 Query 40962 -TTACAGTGCGTTATAGATACGAT---TA--AATCCGATCCCGATAGCCGACGTATAATA 41015 || | | | || || | | | | || ||||||| | || |||||| || | Sbjct 8091 CTTGCTGAG-GTGATTCACAAGCTGCGTACGAATCCGA--CTGA---CCGACGGATTGTG 8144 Query 41016 TTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTA 41075 | | |||||||| || | || | | ||||||| |||| || || || |||| Sbjct 8145 CTCTCGGCGTGGAATCCCTCAGATCTCAACGAGATGGCACTGCCGCCGTGCCACATGTTC 8204 Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| |||||| ||| |||| || ||| ||||||| | || | ||| Sbjct 8205 TGCCAGTTCTACGTGGCCAATGGGGAATTGTCTTGCCAAATGTATCAGCGCTCGGCCGAC 8264 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||||||| || || || || ||||| || || || || || || ||| || | ||| Sbjct 8265 ATGGGACTTGGTGTACCTTTCAACATCGCCAGCTACGCGCTTCTTACGCGACTGGTAGCA 8324 Query 41196 CACGTTACCAATTTAAAACCTGGTGAATTTGTTCAC 41231 || || || |||| ||||| || ||| | ||| Sbjct 8325 CAAGTGACAGGCCTAAAGCCTGGCGAGTTTATCCAC 8360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397231916791300