Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq39983 100 2e-16 seq35973 93.3 4e-14 seq3294 87.8 2e-12 seq44488 86.0 5e-12 >seq39983 Length=4479 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || ||||| | |||| |||| || | || || || ||||| || ||||||||| Sbjct 265 TTTCCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCG 206 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || |||| || ||||| || ||||| | ||||| ||||| || || ||| Sbjct 205 CTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGC 146 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||| | |||| | | || | | ||| | | || Sbjct 145 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 86 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 85 ACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq35973 Length=2546 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| ||| | ||| || || || || || |||||||||| Sbjct 143 TGCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGC 202 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | || |||| || ||||| || || ||| | || ||||||||||| || || | Sbjct 203 TCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAG 262 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| || || | || | | | || | | ||| | | || | Sbjct 263 GGATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 322 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| |||| ||| ||||||||||| ||||| Sbjct 323 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | |||||| || || || || |||||||||| Sbjct 371 TGCCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 430 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| ||||| ||| | || |||||||| || || || | Sbjct 431 TCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAG 490 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || || || | || | | | || | | ||| | | || | Sbjct 491 GGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 550 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||| |||| ||| ||||| || || ||||||| ||| Sbjct 551 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCATAGTTGC 605 >seq3294 Length=374 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTT-TTGAATATTGTAGTCG 27077 |||| || |||| || | |||| || | || || || || ||| || ||||||||| Sbjct 374 TGCCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCG 315 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || |||| || ||||| || ||||| | ||||| ||||| || || ||| Sbjct 314 CTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGC 255 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||| |||| | | || | | ||| | | || Sbjct 254 GGGATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCC 195 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 194 ACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 >seq44488 Length=18910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||||| | || |||| || ||||| || ||| Sbjct 18867 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCG 18808 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || ||||| | ||||| || || ||||| ||| Sbjct 18807 GCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGACTTC 18748 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | | ||| | | || || || || || |||| ||||||||||| || Sbjct 18747 ACATTGTCGATCGAGTCCGACGGCTCTACATCGAGCGTGATAGTCTTGCCCGTCAGCGTC 18688 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 18687 TTCACGAAGATCTGCAT 18671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424694824641120