Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq45717 266 4e-66 seq46202 152 6e-32 seq46075 129 7e-25 >seq45717 Length=39516 Score = 266 bits (294), Expect = 4e-66 Identities = 1067/1654 (65%), Gaps = 62/1654 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| ||||||||| || | ||||| || | | ||| Sbjct 5192 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAAAAGTGCATGGACGTGAGCTT 5133 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || | Sbjct 5132 ACTGATAGTCGGGTCAGCGATGTGGATGTTCAGCGACTGACTCTGGCA--GAT--AT-AC 5078 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || ||||| | || || | ||| ||||| ||||| |||||||| || | Sbjct 5077 GCG-CCTCGGTCCGCTGACAAGTCCAGAACAGCCTTCTGTTTGATCTCCCACACCGTTTT 5019 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| || || || || | ||| ||||||| || ||||| | || Sbjct 5018 GTACTTCTCCTTAACGTCTTCCGGAATGGTCTTGATCTTTTGGACTGAGCCACCATCATT 4959 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||||| || | || | || |||| || Sbjct 4958 CAGAATCTGAT--TGCGTACTTCCGGCGTCCAGATTCCGAGCTCGATTAGTTCCTTCATC 4901 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || ||||| ||||| | ||||| || || || ||| | || || |||| | Sbjct 4900 AGGTGCTTGTTGACGATGGTGAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGAC 4841 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||||||||| |||||||||||||||||| Sbjct 4840 GTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATG 4781 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | || || ||| || ||||| | || | | | || || || ||| || Sbjct 4780 GGGGCAACCAGCAGCGAGTTGCGAAGACCATGTTTGATTACGTCATCTTTCAGTGCGGCC 4721 Query 118314 CAGT-------CGTAG-TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 118365 || | | || ||||| | || | |||| ||||||| ||||||| ||| | Sbjct 4720 CAATTCCAAAGCCCAGATTGAGGTGTGACACCCC-----ACATATCGAACTGGAAGATCC 4666 Query 118366 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC-CGCCAAT-TC 118423 | | | |||||||| |||| || ||||| || || ||| ||| | || |||| || Sbjct 4665 CCTTGCTGGCTGGCGAGCCCTGGAACGTCTCGTAAGGTCCC--AACTCCACGGCAATCTC 4608 Query 118424 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483 | || ||| | ||| || || || || || || ||| |||| | | || Sbjct 4607 CATGGACGTCTCCATGGCAGCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTC-TT 4549 Query 118484 GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCA-CAAAATAAATACATCCGCGAGACCTTG 118540 | || | || || |||| | ||| || ||| || || | || || |||||||| Sbjct 4548 GAGCTTGCGGGCTCTCGAACGGGTAGTT--CATCAAGATGAAGGCGTCAGCCAGACCTTG 4491 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGAT 118599 || || | |||||| || ||||| | ||| || ||||| ||||| ||| | ||||||| Sbjct 4490 AACGCCAATGCCAATAGGACGATGCCGCATGTTGGACTTGCGAGCC-TCTGCTACGGGAT 4432 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 || | || || || ||| | || || || || | ||||| | ||| | | Sbjct 4431 AATAGTTGACGTCTATGACCTTGTTGAGGTTGCGCGTAATCACCTTGACCACTTCGTACA 4372 Query 118660 GCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718 ||| ||| || || || ||| || | || ||||||| || |||| ||| Sbjct 4371 ACTTGCGGTAGTCGAACACGGCG-------TCCTCCACGAACTTAGGGAGCGCGACGGAC 4319 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 || | || ||||| | |||||| || ||||| || | ||| ||| ||| Sbjct 4318 GCTAAGTTGCACACCGCCACCTCATCAGGCGATGTATACTCCATCACTTCGCAGCATAAG 4259 Query 118779 TT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 || || | |||||| |||||||||| ||| || ||||| ||| || |||| Sbjct 4258 TTGCTGGAGCG--AATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCT 4201 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| ||||| | || || ||||| | || | | | || || ||| || Sbjct 4200 TGTACAGCATAAAAGGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCA--CAG 4143 Query 118897 CGGCAGCTGGCACAGTGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | || || | | ||| || || || || ||| |||||||||| ||| || | Sbjct 4142 CTGCTGCGCGTTGA-TGGTCTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTACAGAG 4084 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 ||| ||||| || ||| | ||| |||| || || || | | || ||||||||| Sbjct 4083 TTTCGAACTCGTCGCCCCAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGAC 4024 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 ||| | || |||| || |||||||||||||| || || | ||||||||| ||| Sbjct 4023 TCCACTTGCCGTTGGCCTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGA 3964 Query 119074 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 | | || || ||| ||| | || || || ||||| |||| || || | Sbjct 3963 ACAAGTCGCGGGCGCGGTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAA 3904 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAG 119190 | || |||||||| || |||| ||| | |||| || ||||| || | || Sbjct 3903 ACACGTCGGCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGC 3844 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||||| ||||| | ||| ||| ||||||| ||||| ||||| || || || |||| || Sbjct 3843 CCTGGTCCACATAGCGCGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGG 3784 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 | ||| || || || || || ||| |||| | || | ||| || |||| Sbjct 3783 ACGAGCCGTTCGTGCCACGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATAC 3724 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || || ||||| || ||||| ||||| | | | ||| || ||||||| || | Sbjct 3723 CGATGCCGCCCGCCCATTTCGAGATACAGGCGCATTGCTTTAGAGTGTCGTAGATGCCCT 3664 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 ||||||||||| ||| | || | |||||| || |||| || || | || || | Sbjct 3663 CGATCGAGTCATCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGC 3604 Query 119431 CAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 | || ||||||||||| || || ||||| |||| Sbjct 3603 CCGCATTGAAGAGAGTAGGGGTGGCGTGCGTGAA 3570 >seq46202 Length=175750 Score = 152 bits (168), Expect = 6e-32 Identities = 392/583 (67%), Gaps = 22/583 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 || || || || || |||||||||||||| ||||| || | ||| || || | |||| Sbjct 40168 TACTCGCCCACTCGTTTCTCGAAGAAGTTCGTCTTTCCCTG-AAGA-GAAATCATGTCCA 40225 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | | || || |||||||| | || | || | ||| || | | | || |||| Sbjct 40226 TCCAGTCGAACGGGTTCTTAGCGTGGTAGATCTTGGACACACCGAGCGAGTACAGCAGAC 40285 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | ||| |||||||||||| |||| | |||||||| || || || | Sbjct 40286 GATCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCAATCAGCTCCA 40345 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || |||| ||| | |||| | | ||||| |||||| || ||||| || ||| Sbjct 40346 CCGGAAGCGAGTCACGTACGAACTCGTGTTCAATCGTCACAGCATCGCGCACAATTTCGT 40405 Query 129966 GAAT---GGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAG----AGTTCCACGGCA 130018 | | | |||||| | || | || || || |||| || || |||| | Sbjct 40406 GCACTCGGCTCTCCGGG--AGCT-TAGTGACCAG---CTTGGAGTACAAGAGGCACG-CG 40458 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || ||| ||| | ||||||||||| |||||| || |||||||||| ||||| ||| Sbjct 40459 AAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGACCAGGC 40518 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 |||||||| |||||||||||||| ||||| | || || ||||| ||||||||||| || Sbjct 40519 ATGAGACCACGCTTCTTCAACCAAAAAATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCT 40578 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCA 130197 || || || || || | ||||||||| | | ||| | || | || |||| Sbjct 40579 TCTACTGCAGCAAAAGCCAGGAGACGCTCCGGGTACGAG-GACACACGAGGGTCGCACCA 40637 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| |||||||| || || || || || ||| |||| ||||| || || | || Sbjct 40638 CTTGATCGCCCAGTGAGCTTTCTTGGTGACACAAGGGATGGTCTCAATTGCACGCAGCAG 40697 Query 130258 TTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 130299 | | ||| || ||||| || ||||||||| | || ||||| Sbjct 40698 ATGGTCCTTCTC-GATGGCGTCCTTGATGTACGTGTCAATGAG 40739 >seq46075 Length=65249 Score = 129 bits (142), Expect = 7e-25 Identities = 304/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || ||||||||||||||||||||||| || | | ||| | ||||| Sbjct 31528 ATACTCGCCCACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGTAGTGAGATCATGTCCAT 31587 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGCTGGCACTCCAATCTGTTTGAGGAGA 129844 | || ||||||||||| ||| | || || ||| ||| | || || ||| Sbjct 31588 CCAGTCGAATGGGTTCTTCACGTTGTAGATCTTGGATACAC-CCAGTGAGTAC-AGAAGA 31645 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||| | || |||||||||||| | |||| | | |||||||| |||||||| | Sbjct 31646 CGATCTGCCACAAACTCAATGTACTGACACATGAGCGCCGAGTTCATGCCGATGAGCTCC 31705 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 ||||| | || | | |||| | | |||||| ||||||| || || | ||| | Sbjct 31706 ACCGGGAGAGAATCGCACACGAACTCGTGCTCAATCGCCACAGCGTCACGAATGATCTCA 31765 Query 129965 TGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAA 130020 || | | ||| | ||| | | ||| || || | | | || |||| | || Sbjct 31766 TGGACACGACTCTCCGGCAGCT-TGTTGACCAGCTTCGAGTACA--TCAGGCACG-CGAA 31821 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| | ||||||||| || || | ||| |||||||||| || || ||||| Sbjct 31822 GTCCGTGTGCATACCCTCGTCGCGACTAATCATTTCGTTCGAGAAGCTTAGGCCAGGCAT 31881 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 || || |||||||| | |||||| | | || || ||||| ||||||||||| || || Sbjct 31882 AAGTCCTCGCTTCTTGAGCCAGAACACGGAGCAGAACGAGCCTGAGAAGAAGATTCCTTC 31941 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGC 130170 ||| || ||||| | |||||||| || Sbjct 31942 CACTGCAGCAAACGCTAGCAGACGCTCTGC 31971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618077589845600