Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq45717 226 3e-54 seq46202 125 8e-24 seq45735 107 2e-18 seq46075 87.8 2e-12 seq44223 82.4 9e-11 >seq45717 Length=39516 Score = 226 bits (250), Expect = 3e-54 Identities = 1063/1654 (64%), Gaps = 62/1654 (4%) Strand=Plus/Plus Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| ||||| || || || ||||||||||| || || ||| | ||||| |||| | Sbjct 3570 TTCACGCACGCCACCCCTACTCTCTTCAATGCGGGCACGCCACGTCCCCAGCTGTCTTCT 3629 Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 || ||||| | || | |||| ||||| ||| | || ||||| | ||||| | | | Sbjct 3630 TGTTTCCTCTTGGCTATGCAGGATGACTCGATCGAGGGCATCTACGACACTCTAAAGCAA 3689 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 104494 || || ||||| || ||||| || || || || || || || | | | ||| Sbjct 3690 TGCGCCTGTATCTCGAAATGGGCGGGCGGCATCGGTATCAGTATGCACAACATCCGCGCC 3749 Query 104495 AATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 104553 | ||| | || || || || || || || || |||| ||||| || ||||| || Sbjct 3750 ACTAACAGCTAC-ATCCGTGGCACGAACGGCTCGTCCAATGGCATTATCCCCATGCTGCG 3808 Query 104554 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTAT 104610 || ||||||| ||||||||||||||| | || | || | || ||||| || | Sbjct 3809 TGTGTTTAACGACACAGCGCGCTATGTGGACCAGGGCGGAGGGAAGCGCAAGGGCTCCTT 3868 Query 104611 CGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAA 104670 ||| |||| | ||||| |||||||| || | | |||||||| || ||||| || Sbjct 3869 CGCCATCTACTTGGAGCCTTGGCACGCCGACGTGTTTGAGTTCCTGGATCTGCGTAAGAA 3928 Query 104671 CCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 104730 ||| || |||| || |||||| | |||| ||| |||||| | || ||||| Sbjct 3929 CCACGGCAACGAACTCCACCGCGCCCGCGACTTGTTCTACGCGCTCTGGGTGCCTGATCT 3988 Query 104731 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 104790 |||||||||| | || |||| | ||||| ||| |||||| ||||| || | || || Sbjct 3989 CTTCATGAAGCGCGTAGAGGCCAACGGCAAGTGGAGTCTCTTCTGTCCTAACGAAGCCCC 4048 Query 104791 TGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG 104849 || |||| ||| ||| | ||| || ||||| ||| | || ||| |||||||||| || Sbjct 4049 GGGCCTCTACGAGTGCTG-GGGCGACGAGTTCGAAACTCTGTACGAAAAGTACGAGACAG 4107 Query 104850 AAGGTCGGGCGACTGCGACGGT----GC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAA 104904 |||| || ||| | ||| | || |||| || ||||| || || | | Sbjct 4108 AAGGACGTGCGCGTAAGACCATCAACGCGCAGCAGC-----TGTGGTTCGCCATCTTGGA 4162 Query 104905 GTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAG 104964 |||| | ||||||||| ||| | ||||| ||||| ||||| |||| ||| Sbjct 4163 CGCTCAGATCGAGACTGGCGTACCTTTTATGCTGTACAAGGACGCAGCCAACCGCAAGTC 4222 Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGA 105021 || ||| |||| ||||| || || | || ||| | || ||| | |||| Sbjct 4223 GAACCAACAGAACTTGGG---GACCATTCGCTCCAGCAACTTATGCTGCGAAGTGATGGA 4279 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 | |||| |||||| ||| ||||| ||| | || || |||| ||||| |||| Sbjct 4280 GTATACATCGCCTGATGAGGTGGCGGTGTGCAACTTAGCGTCCGTCGCGCTCCCTAAGTT 4339 Query 105082 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 ||||| ||| | || || || || | ||||||| || | Sbjct 4340 CGTGGA-----GGACGCCG-TGTTCGACTACCGCAAGTTGTACGAAGTGGTCAAGGTGAT 4393 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTA 105200 || ||||| |||| || || || || | ||| ||||| | ||| ||||| | Sbjct 4394 TACGCGCAACCTCAACAAGGTCATAGACGTCAACTATTATCCCGTAGCAGA-GGCTCGCA 4452 Query 105201 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA 105260 | || || ||| | || ||||| ||||| | || ||||| ||||| || || | |||| Sbjct 4453 AGTCCAACATGCGGCATCGTCCTATTGGCATTGGCGTTCAAGGTCTGGCTGACGCCTTCA 4512 Query 105261 TTCTTTGT-CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTT 105319 |||| | | || | || || | |||| | ||| | || | ||| || Sbjct 4513 -TCTTGATGAACTACCCGTTCGAGAGCCCGCAAGCTCAAGAATTGAACAAGAACATCTTC 4571 Query 105320 GAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAG--GTTGATGG 105375 |||||||| || || || | ||| | || || ||| | || | | |||| || Sbjct 4572 GAGACCATCTACTTTGCTGCCATGGAGAC--GTCCATGGAGATTGCCGTGGAGTTG--GG 4627 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATG 105433 || || || || || |||| || ||||| || ||||||| ||| || || |||||| Sbjct 4628 ACCTTACGAGACGTTCCAGGGCTCGCCAGC--CAGCAAGGGGATCTTCCAGTTCGATATG 4685 Query 105434 TGGGAAGGTGAGAC--CAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGA--ACG-CAT 105486 |||| || | || ||| || || | | |||| || || || || ||| || Sbjct 4686 TGGG-GTGTCACACCTCAATCTGGGCTTTGGAATTGGGCCGCACTGAAAGATGACGTAAT 4744 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 || | | |||||||| ||| || || | || || ||||| ||||||||||| || Sbjct 4745 CA---AACATGGTCTTCGCAACTCGCTGCTGGTTGCCCCCATGCCCACAGCCTCCACGGC 4801 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 105606 |||||| |||| || || || | | || || |||||| | ||||| || | | Sbjct 4802 CCAAATCCTGGGCAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGTCG 4861 Query 105607 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 105666 || || || ||||| || ||||||||||| || || | || || | ||| | Sbjct 4862 CGTGCTGGCTGGCGAGTTCACCATCGTCAACAAGCACCTGATGAAGGAACTAATCGAGCT 4921 Query 105667 TGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAA 105724 || ||||| | ||| || | | ||| || |||| | ||||| || | ||| Sbjct 4922 CGGAATCTGGACGCCGGAAGTACGCA--ATCAGATTCTGAATGATGGTGGCTCAGTCCAA 4979 Query 105725 AATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG 105784 || || | ||||| | || ||||| || |||| || || ||||| ||||| Sbjct 4980 AAGATCAAGACCATTCCGGAAGACGTTAAGGAGAAGTACAAAACGGTGTGGGAGATCAAA 5039 Query 105785 ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAG 105843 ||||| ||| | ||| || | || || || || ||| | || || ||||| Sbjct 5040 CAGAAGGCTGTTCTGGACTTGTCAGCGGACCGAGG-CGCGTATATCTGCCAGAGTCAGTC 5098 Query 105844 TATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAG 105903 |||| || ||| | || || || |||||| | || |||||| | ||| Sbjct 5099 GCTGAACATCCACATCGCTGACCCGACTATCAGTAAGCTCACGTCCATGCACTTTTACGC 5158 Query 105904 TTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 ||||||||||| ||||| || || ||||| ||| Sbjct 5159 CTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 5192 >seq46202 Length=175750 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| ||| | || ||||| || || || ||||||||||| || || |||||| | Sbjct 40607 GAGCGTCTCCTGGCTTTTGCTGCAGTAGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 40548 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| |||| | |||||||| ||||||||||| |||||| ||||||| |||||||| ||| Sbjct 40547 ATTTTTTGGTTGAAGAAGCGTGGTCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTCATC 40488 Query 94924 TCTCGTGACGAGGG 94937 |||||||||||| Sbjct 40487 AGTCGTGACGAGGG 40474 >seq45735 Length=40545 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169312 GAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACC 169371 |||||| | ||| | |||||| || || ||| ||| ||||| |||||||||||||| Sbjct 21129 GAGCTGCGCGACGGTGGCATCACGCACGTTCAGCAGCTTACCACGCAGAGGGAAGACACC 21188 Query 169372 GTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACC 169431 ||| || ||||| |||||||||| ||||| || ||||| |||| |||||| || ||||| Sbjct 21189 GTATTGGTCACGTCCAACGACGGCCAGACCAGCCACTGCAAGAGCCTTCGCTGAATCACC 21248 Query 169432 CTCGGTGACGATGAGCG 169448 || || | || |||| Sbjct 21249 TTCCGTCAATATAAGCG 21265 >seq46075 Length=65249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/267 (67%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| ||| || ||||||| | ||||| | || ||| || ||| ||| | Sbjct 32090 CTTATTGACACGTACATCAAGGATGCGGTGGAGAAAGACCACCTCCTTCGAGCTATCGAG 32031 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 94790 || | |||||| | || |||||| | | || |||| ||| || || Sbjct 32030 ACCATCCCGTGTGTCCAGAAGAAA----------CACTCAAATGGTGTGACCCACGTGTA 31981 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| | | || ||||| || | || ||||| || || || ||||||||||| || Sbjct 31980 TCGT-CGTACGCAGAGCGTCTGCTAGCGTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGG 31922 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| | | | ||||||||||||||||| || ||||| || || ||||||| Sbjct 31921 CTCGTTCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACTTATGCCTGGCCTAAGCTTCTC 31862 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| | || ||| |||||||| Sbjct 31861 GAACGAAATGATTAGTCGCGACGAGGG 31835 >seq44223 Length=16829 Score = 82.4 bits (90), Expect = 9e-11 Identities = 196/291 (67%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| ||||| || |||||| | ||| || || | || ||||||||||||| Sbjct 5794 CGATCGAAGCGGCCAGGACGACATAACGCTGGGTCCAGCACCTCTGGGCGATTCGTCGCG 5735 Query 9584 GCGATGACAACAATACCTGTTTCATT---ATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || || || | || || | |||| ||||| || |||||||| ||||| | |||| Sbjct 5734 GCAATCACGATAACTCCGTTCACATTCCCTTCAAAGCCGTCCATCTCGGTCAATAATTGG 5675 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 || | ||||| |||||||| ||||||| || ||| ||| ||| | || | Sbjct 5674 TTCAATGTTTGCTCCCGTTCGTCATTCGAATTCAGACCTCCA----CGCGCT--TTAGCT 5621 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 | ||| |||||||| || || || | ||| ||| | ||| | | ||| | || | Sbjct 5620 AAGGCGTCAATCTCGTCGATAAAAATGATACATTGCGGATACT-GGGAG-GCCTGGGTGA 5563 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 ||||||| || || || ||||| ||| || | |||||| ||||||| Sbjct 5562 AGAGATCTCGCACTCGAGCAGCGCCTCGACCTACTAGCATCTCGACAAAGT 5512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582923529442400