Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq35973 150 2e-31 seq39983 141 8e-29 seq46143 134 1e-26 seq3294 125 6e-24 seq44488 113 4e-20 >seq35973 Length=2546 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| ||||||||||| | || || || || ||||| || || Sbjct 372 CATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTC 313 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||||||||| || || |||||||| || || || || Sbjct 312 GGACTCGATCGACAACGTCAAGCAAAAAATTCAGGATAAGGAAGGCATCCCTCCTGACCA 253 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||| ||||| || |||| ||| | || | ||| ||||| Sbjct 252 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACGCTGAGCGACTACAA 193 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | ||| |||| | || |||| |||||||| Sbjct 192 CATCCAGAAGGAATCAACGCTTCATCTGGTGCTTCGCCTGCGTGGTGGCAT 142 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||||||| | || || || || ||||| || || Sbjct 599 ATGCAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 540 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||||||||| ||||| |||||||| || || || || Sbjct 539 GACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 480 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||| ||| | || | ||| |||||| Sbjct 479 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 420 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| | || |||| |||||||| Sbjct 419 ATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTGCGTGGTGGCAT 370 Score = 123 bits (136), Expect = 2e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| ||||||||||| | || || || || ||||| || || Sbjct 144 CATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTC 85 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||||||||| ||||| |||||||| || || || || Sbjct 84 AGACTCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCA 25 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||||| | || | ||| || Sbjct 24 ACAGCGTCTGATCTTCGCTGG 4 >seq39983 Length=4479 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | ||||| ||||| ||||| ||||| Sbjct 35 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTC 94 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || || ||||| ||||| || ||||| || || || || Sbjct 95 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 154 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || ||| || || | ||| ||||| Sbjct 155 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAA 214 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| |||||||||||||| | || ||||| ||||| | || || || Sbjct 215 CATCCAAAAGGAGTCGACACTCCACCTGGTTCTGCGTCTTCGCGGCGG 262 >seq46143 Length=82526 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || ||||| | || || || || ||||| ||||| Sbjct 41444 ATGCAGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAGCCGTCG 41503 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| || ||||| || ||||| |||||||| || || || || Sbjct 41504 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 41563 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || || | || | || || |||||| Sbjct 41564 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGACTACAAC 41623 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || |||| |||||| |||| ||||| Sbjct 41624 ATCCAGAAGGAGTCGACCCTGCACCTGGTGTTGCGTCTGCGTGGTGG 41670 >seq3294 Length=374 Score = 125 bits (138), Expect = 6e-24 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | ||||| ||||| ||||| ||||| Sbjct 144 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTC 203 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || ||||| ||||| || ||||| || || || || Sbjct 204 GGACTCGATCGACAACGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 263 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || ||| || || | ||| ||||| Sbjct 264 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAA 323 Query 27167 CATTCAA-AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| ||| ||||||||||| | || |||| | || |||| ||||||| Sbjct 324 CATCCAAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGGCA 374 >seq44488 Length=18910 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| |||| || || || || || ||||| Sbjct 18671 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAGCCGTCG 18730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || ||||| ||||| || ||||| || || || || Sbjct 18731 GACTCGATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 18790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | || ||| || || | ||| |||||| Sbjct 18791 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAAC 18850 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| | || |||| ||||| || Sbjct 18851 ATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGTGGTAT 18900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434666908435200