Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq43815 100 2e-16 seq39983 98.7 9e-16 seq46143 95.1 1e-14 seq35973 87.8 2e-12 >seq43815 Length=14243 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 |||||||||||||| | || | | ||| |||||| |||||||| |||| | | | | Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGA-CATTGTC 5127 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || ||||||| || || ||||| Sbjct 5126 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 5067 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 5066 GATCTGCAT 5058 >seq39983 Length=4479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || ||| || || || |||| |||||||| ||||| ||||| Sbjct 227 CTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAA 168 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| || ||||| || | ||| Sbjct 167 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGT 109 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || || ||||||||| | || || | || ||||||||||| || | Sbjct 108 TGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCA 49 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 48 CGAAGATCTGCAT 36 >seq46143 Length=82526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| || || || ||| || || || || || || | || || || | Sbjct 41658 CGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA 41599 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || |||||||||||||| | || | || || ||| Sbjct 41598 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 41539 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||||||||| |||| | | | || | | || || ||||||||| | |||||| Sbjct 41538 TCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 41480 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| || || || || || || ||||| || Sbjct 41479 GGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq35973 Length=2546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| ||||| || || || || || || ||| || || || | Sbjct 156 GCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCC 215 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || |||||||| ||||| | || | || || || Sbjct 216 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTT 275 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||||| || |||| ||| | | | || || | ||||||||||| ||||| Sbjct 276 ATCCTGAATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 334 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || |||| || || |||||||| ||||| Sbjct 335 TCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||| || || || | Sbjct 384 GCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 443 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || |||||||||||||| | || | || || || Sbjct 444 GTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTT 503 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||||| || |||| ||| | | | || || | ||||||||||| ||||| Sbjct 504 GTCCTGAATTTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 562 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || |||| || || || || || ||||| Sbjct 563 TCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429303424875380