Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq44985 134 1e-26 >seq44985 Length=24218 Score = 134 bits (148), Expect = 1e-26 Identities = 392/593 (66%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||||||||| || | || || ||||| || || || | | |||| Sbjct 8416 AGCTGTTTCTGAAGCGGTTCCACATGGTTTAGATACACGTGTGCATCACCGATGACGTGG 8357 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 | |||||| || || | ||| || || || || || | || ||| || || | |||| Sbjct 8356 ATAAACTCGCCAGGCTTTAGGCCTGTCACTTGTGCTACCAGTCGCGTAAGAAGCGCGTAG 8297 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || ||||| || || |||||||| |||| | ||| || | || || Sbjct 8296 CTGGCGATGTTGAAAGGTACACCAAGTCCCATGTCGGCCGAGCGCTGATACATTTGGCAA 8237 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | || |||| | ||||| ||||| || | ||||||||| || || ||||| Sbjct 8236 GACAATTCCCCATTGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGTGCCATC 8177 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 27428 | | ||| ||| ||||| || | | | || || | ||| || | | || Sbjct 8176 TCGTTGAGATCTGAGGGATTCCACGCCGAGAGCACAATCCGTCGGTCAGTCGGATTCGTA 8117 Query 27429 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 | | | || | ||| | || ||||| ||||| || | || | |||||| | Sbjct 8116 CGCAGCTTGTGAATCAC----CTCAGCAAGCTGGTCCACGCCTTTGCCAGTGTAGTCCGC 8061 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 |||||||||||||| || || || || | ||| || || ||||| || ||||| || Sbjct 8060 ATGCATGTCCGTGTACTTGGCGCCAAAGTGGCGCCACTGAAAGCCGTAAACAGGTCCAAG 8001 Query 27546 GTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 ||| || | |||| |||| |||| || | | |||| | || | || || || Sbjct 8000 GTCACCAACCTCCCGATGCT-GAAGTCCTCGACTATCCAGGTACTCGCGAGATCCATTAC 7942 Query 27605 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 27663 |||||||||| | | | |||| | | | | | || | | ||| || || | | Sbjct 7941 CGTCCCAGATGTGAATATCTTTCTGCTGCAAAGTGTGTGCA-CTCGTGTCGCCACTAATG 7883 Query 27664 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 ||||||| |||||||| | || | |||||||||||||||||| || || Sbjct 7882 AACCACAAAAGCTCCTCGGCTACACCTCGCCAAAAGACCCTCTTGGTTGTCAG 7830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369298874150060