Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq35973 179 8e-40 seq44488 168 1e-36 seq46143 161 2e-34 seq3294 159 7e-34 seq39238 149 1e-30 seq39983 138 2e-27 seq43815 136 8e-27 seq45735 105 1e-17 seq44604 105 1e-17 seq44866 102 2e-16 seq43870 102 2e-16 >seq35973 Length=2546 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| |||||||| | ||| ||| || |||||||||||||| Sbjct 145 CCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCTC 204 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| || || || || || ||||||| ||| ||||||||| || Sbjct 205 AGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGGG 264 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || || || ||| || ||| | ||||| | |||||||| || || Sbjct 265 ATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 324 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || ||||||||||| || || |||||||| Sbjct 325 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 371 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | ||| || || |||||||||||||| Sbjct 373 CCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 432 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| ||| || |||||| || Sbjct 433 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 492 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || || ||| || ||| | ||||| | |||||||| || || Sbjct 493 ATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 552 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || ||||||||||| ||||| |||||||| Sbjct 553 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||| ||||||||| || || || |||||||| || || ||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| | ||| |||| || || || || ||||||||||| || |||||| Sbjct 64 TTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAA 123 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || |||||||| Sbjct 124 GTCTTCACAAAAATCTGCAT 143 >seq44488 Length=18910 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 18898 ACCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 18839 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||||||||| | || || |||||| ||| Sbjct 18838 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 18779 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| | |||||| | || || Sbjct 18778 GATGCCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTCTAC 18719 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||||| Sbjct 18718 ATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTT 18668 >seq46143 Length=82526 Score = 161 bits (178), Expect = 2e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | ||||| || | || || || |||||||||||||| | Sbjct 41671 ACCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 41612 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 41611 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 41552 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| ||||| || ||||| || | || || ||||||| | || | Sbjct 41551 GATGCCTTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCA 41493 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | ||||| ||||| || || ||||| | ||||| ||||| |||||||||||| Sbjct 41492 CGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 41440 >seq3294 Length=374 Score = 159 bits (176), Expect = 7e-34 Identities = 173/228 (76%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||||| ||||| || | || | | ||| ||||||||||||||| Sbjct 372 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCT 313 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||||||||| | || || |||||| ||| Sbjct 312 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 253 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||| | |||||| | || || Sbjct 252 GATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 193 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 192 GTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 145 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 143 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 84 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||||||||| | || || |||||| ||| Sbjct 83 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 24 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || ||||||||||| || ||||| Sbjct 23 ATGCCCTCCTTGTCCTGAATCTT 1 >seq39238 Length=3815 Score = 149 bits (164), Expect = 1e-30 Identities = 175/232 (75%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||||||||| ||||| || | ||| || || |||||||||||||| Sbjct 3561 ACCGCCACGCAGGCGAAGCACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCT 3620 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || || ||||||| ||| || |||||| || Sbjct 3621 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 3680 Query 282992 AATACCCTCCTTGTCTTGGA--TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || |||||||| || | | ||||| || ||| | ||||| | ||| |||| || Sbjct 3681 GATGCCTTCCTTGTCCTGTAATTTTTTGC-TTGACGTTGTCGATCGAGTCTGAAGGCTCC 3739 Query 283050 ACTTCGAGAGTGATCGTCTTACCCG-TCAAAGTCTTAAC-GAATATCTGCAT 283099 || || || ||||||||||| || | | |||||||| || || |||||||| Sbjct 3740 ACGTCCAGCGTGATCGTCTTGCCAGTTAAAAGTCTTCACAAAAGATCTGCAT 3791 >seq39983 Length=4479 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || ||||| || | || || ||||||||||||||||| Sbjct 262 CCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 203 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||||||||| | || || |||||| ||| Sbjct 202 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 143 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 142 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 84 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 83 GTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 36 >seq43815 Length=14243 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 5245 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 5186 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||| || ||||||||||| || || || ||| || || | || Sbjct 5185 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGC-TTGACATTGTC 5127 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| |||||||| ||||| || || Sbjct 5126 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 5067 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 5066 GATCTGCAT 5058 >seq45735 Length=40545 Score = 105 bits (116), Expect = 1e-17 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | ||| ||| ||||| || ||||||| | || ||||||||| Sbjct 20205 CGTGAAGATGTATCGAGGACTAGCAGCATCCTTACCTCCTTGCAATCGCGTACCAAACTG 20264 Query 273839 ACCCTCGGG---CAGTAGC--CAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||| || ||||||| ||| |||| || || ||| | ||||| ||||| Sbjct 20265 ACCTGACGGAAACAGTAGCGGCAGGTTAT-----TGGATCCCACGAAGTCCTGCGCCATG 20319 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 || || || ||| || | || | || ||||||||||| || |||| ||| | | Sbjct 20320 TTGACAATCGTCGAGTGTAACGAAGCTTCTCCGTGGTGATACGCCGTGTGCTCGCTGCAA 20379 Query 273954 TAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGC-GGAATA 274012 ||||| | ||| || |||||||| || || || |||||| || |||| || | Sbjct 20380 TAACCTGCTAGCTGTGCCACCTTCACTTCACTTGT-AAGTTTGCGTTTCATGCAGGCGAA 20438 Query 274013 CAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAA 274059 || || || ||||||||| ||||| |||||||| ||||| |||| Sbjct 20439 CAGAACTTTTCGCTGCGAGATCTTGAGACCATCAACCACCGACGGAA 20485 >seq44604 Length=19890 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| Sbjct 18447 TTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 18388 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 || ||| |||||||||||||||||||| |||||||| || | |||||| || || Sbjct 18387 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGACGGGTG 18328 Query 316281 CTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAAT 316331 |||||| || |||| | || | |||| | || ||||||| ||||| Sbjct 18327 CTTCCACACCTGACCGCTGGTCGGCTCCACTTCACCCGTTAGCATCTTAAT 18277 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||||| || |||||||| ||| | ||||| ||| |||| ||||||||| Sbjct 18966 GTGAGTAATCATGACGACCCCACCGTTGAACTCCTTAATAGCCGAAGCCAGGGCACCGAG 18907 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 |||||||| | |||| || ||||||||||| || | | ||| || | |||| Sbjct 18906 CGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGAATGTGCGGGTTCAGCCA 18847 Query 315771 TAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGA 315830 | ||| || | | |||| ||| | || || ||||||||||| ||||| ||||| || Sbjct 18846 CATAGCAGCAGCCAGCACGACCTTCACCTTCTGACCACCAGACAGACCACGCATGCGCGA 18787 Query 315831 ATGAGT 315836 ||||| Sbjct 18786 GTGAGT 18781 >seq44866 Length=22666 Score = 102 bits (112), Expect = 2e-16 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | ||||| || ||||||||| || ||| | |||||| ||| Sbjct 19685 TTGGTGAAAATGTAACGAGCACTGGCTGCGTCCTTGCCGCCCATCAGACGCGAACCGAAC 19744 Query 273837 TGACCC--TCGGG-CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| | ||| ||| || || ||||||||||| |||||| | ||||| |||||| Sbjct 19745 TGACCGATTGGGGACAGAAG---GTGGATGTTGTTGCTGCCGACGAAGTCCTGCGCCATA 19801 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | || |||||||| || || ||| |||| | Sbjct 19802 TTCACGATACAACCCTGGAGACTCGCTTCTCCGTGGTGGTATGCAGAGTGCTCGGACACG 19861 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 |||||| | ||| || ||||| Sbjct 19862 TAACCAGCCAGCTGTGCCACCTT 19884 >seq43870 Length=14547 Score = 102 bits (112), Expect = 2e-16 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | ||||| || ||||||||| || ||| | || ||| ||| Sbjct 8198 TTGGTGAAAATGTAACGAGCACTGGCTGCGTCCTTGCCGCCCATCAGACGCGTACCGAAC 8139 Query 273837 TGACCC-TCGGG--CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| ||| || || |||||||||||||||||| | ||||| ||||| Sbjct 8138 TGACCGATCGGGGACAGAAG---GTGGATGTTGTTGCTACCGACGAAGTCCTGCGCCATG 8082 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | || |||||||| || || ||| |||| | Sbjct 8081 TTCACGATACAACCCTGGAGACTCGCTTCTCCGTGGTGGTATGCAGAGTGCTCGGACACG 8022 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 |||||| | ||| || ||||| Sbjct 8021 TAACCAGCCAGCTGTGCCACCTT 7999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046118791134040