Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq35973 138 8e-28 seq46143 132 3e-26 seq43815 131 1e-25 seq39983 131 1e-25 seq39238 127 1e-24 seq3294 118 8e-22 seq44488 114 9e-21 >seq35973 Length=2546 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||||||||| |||||| ||||||||||| || Sbjct 369 CATGCCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC 428 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || || ||||||| ||||||||| || | Sbjct 429 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 488 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| || || ||||| | | | || | ||| | | || Sbjct 489 AGGGATGCCTTCCTTGTCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTC 548 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || | ||||||||||| || ||||| Sbjct 549 CACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| |||||||| ||||| ||||||||||| || Sbjct 141 CATGCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTC 200 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| ||||||||||| || || ||||||| |||||| || || | Sbjct 201 GCTCAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGG 260 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| || || ||||| | | | || | ||| | | || Sbjct 261 AGGGATGCCTTCCTTATCCTGAATTTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTC 320 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| ||| |||||||| || || | |||||||| ||||| |||||| Sbjct 321 CACGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 >seq46143 Length=82526 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||||||| || || |||||| ||||||||||| || | Sbjct 41670 CCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41611 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| ||||| ||||||| ||||||||| || | || Sbjct 41610 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 41551 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | |||||||| ||| || |||||||| || ||| | ||| |||| | | |||| Sbjct 41550 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT--CAATGCTGTCCGACGGCTCCA 41493 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||| || || || ||||| |||||||| ||||| || ||||| Sbjct 41492 CGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 41444 >seq43815 Length=14243 Score = 131 bits (144), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| || || |||| Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT 5128 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||||| | ||||| |||| ||| || ||||| ||||| | ||||||||| Sbjct 5127 --CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCAC 5070 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 5069 AAAGATCTGCATGAT 5055 >seq39983 Length=4479 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||||||||||||||| ||| || || |||| || Sbjct 244 ACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCA 185 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||| || | || | || ||||| ||| Sbjct 184 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 125 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||||||||||| | | || | ||| | | ||||| || | ||||| ||||| Sbjct 124 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCTTG 65 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 64 CCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq39238 Length=3815 Score = 127 bits (140), Expect = 1e-24 Identities = 159/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 3579 CACCAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 3638 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC-G 44246 ||||||||| || || ||||||| ||||||||| || | ||| | |||||||| ||| | Sbjct 3639 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 3698 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 | || || ||||| | | | || | ||| | | ||||| |||| ||| ||||||| Sbjct 3699 TAATTTTTTGCTTGACGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCT 3758 Query 44307 TTCCCG-TGAGGGTCTTCAC-GAAGATTTGCATG 44338 | || | | | |||||||| ||||| |||||| Sbjct 3759 TGCCAGTTAAAAGTCTTCACAAAAGATCTGCATG 3792 >seq3294 Length=374 Score = 118 bits (130), Expect = 8e-22 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTT-TTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 |||||||||||| || |||||| |||||||||||| ||| || || |||| | Sbjct 355 CACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCT 296 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| ||||||||||| | |||||||| || | || | || ||||| ||| Sbjct 295 CAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCT 236 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | || | ||| | | ||||| || | ||||| |||| Sbjct 235 GAATCTTAGACTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGGGTAATGGTCT 176 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| || |||||||||||||| |||||| Sbjct 175 TGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 >seq44488 Length=18910 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| || |||||| ||||||||||| || Sbjct 18901 CATACCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC 18842 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || |||||||| ||||||||||| | |||||||| || | Sbjct 18841 GCTCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGG 18782 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | || | ||| | | || Sbjct 18781 CGGGATGCCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATCGAGTCCGACGGCTC 18722 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 18721 TACATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 18671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359787439662420