Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq46143 154 4e-32 seq35973 147 5e-30 seq39983 140 8e-28 seq3294 118 3e-21 seq44488 116 9e-21 seq43815 113 1e-19 >seq46143 Length=82526 Score = 154 bits (170), Expect = 4e-32 Identities = 166/219 (76%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 41441 AAAATGC---AGATTTTCGTCAAGACCCTTACGGGCAAAACCATCACGCTCGACGTGGAG 41497 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||| ||| || || ||||| || || || |||||||| ||||| ||||| || Sbjct 41498 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCT 41557 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || |||||||| ||||| | ||||| | || Sbjct 41558 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCGGAC 41617 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| |||| || || || || ||||| || || ||| Sbjct 41618 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGTTG 41656 >seq35973 Length=2546 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||| | || || || |||||||| || || ||||| || ||| Sbjct 596 CAGATTTTCGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 537 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 536 TCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCAGCAG 477 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 476 CGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 417 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 416 CAGAAGGAGTCTACGCTTCACCTGGT 391 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||| | || || || |||||||| || || ||||| |||||| Sbjct 140 CAGATTTTTGTGAAGACTTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCAGAC 81 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || Sbjct 80 TCGATCGACAACGTCAAGCAAAAAATTCAGGACAAGGAAGGCATCCCTCCTGACCAACAG 21 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 20 CGTCTGATCTTCGCTGG 4 >seq39983 Length=4479 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || ||||| || ||||| || ||| Sbjct 39 CAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCGGAC 98 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || ||||| || |||||||| Sbjct 99 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | ||||| ||| || ||| || Sbjct 159 CGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAACATC 218 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || ||||| || || ||| || Sbjct 219 CAAAAGGAGTCGACACTCCACCTGGTTCTG 248 >seq3294 Length=374 Score = 118 bits (130), Expect = 3e-21 Identities = 151/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || ||||| || ||||| || ||| Sbjct 148 CAGATCTTCGTGAAGACGCTGACGGGCAAGACCATTACCCTTGACGTGGAGCCGTCGGAC 207 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 208 TCGATCGACAACGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 267 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | ||||| ||| || ||| || Sbjct 268 CGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGACTACAACATC 327 Query 178104 CAA-AAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || || || Sbjct 328 CAAGAAGGAGTCGACTCTTCACCTGGT 354 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || ||||| ||||| || Sbjct 1 AAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAG 60 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | ||||| ||| || ||| |||| || || || || || || Sbjct 61 CAGCTTGAGGACGGTCGTACTCTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 120 Query 178125 CTTGT 178129 || || Sbjct 121 CTGGT 125 >seq44488 Length=18910 Score = 116 bits (128), Expect = 9e-21 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || || || || || ||||| ||||| || || Sbjct 18668 AAAATGC---AGATCTTCGTGAAGACGCTGACGGGCAAGACTATCACGCTCGATGTAGAG 18724 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||| | ||||| || || || |||||||||||||| || || ||||| || Sbjct 18725 CCGTCGGACTCGATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGCATCCCGCCT 18784 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||| ||||| || ||||| || || || | ||||| ||| Sbjct 18785 GACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACTCTGAGCGAC 18844 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || || || || || || || || Sbjct 18845 TACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 18879 >seq43815 Length=14243 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| || || ||||| || ||| Sbjct 5061 CAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 5120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || ||||||||||| || |||||||| || |||||||| Sbjct 5121 AGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 5180 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || | || || ||| || Sbjct 5181 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 5240 Query 178104 CAAAA 178108 || || Sbjct 5241 CAGAA 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203017740994440