Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq46143 167 2e-36 seq39983 140 3e-28 seq35973 140 3e-28 seq43815 136 4e-27 seq44488 125 7e-24 seq3294 125 7e-24 >seq46143 Length=82526 Score = 167 bits (184), Expect = 2e-36 Identities = 179/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| |||||||| ||||| || ||||||||| ||||| ||||| Sbjct 41673 CCACCACCACGCAGACGCAACACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 41614 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || |||||||||||||||||||| ||||| ||||| ||||| | Sbjct 41613 GACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 41554 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTC 41811 || | || ||||||||| |||||| ||||| || | || | |||| || ||| Sbjct 41553 GGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTGTCAATGCTGTCCGACGGCTC 41495 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| || | ||| || ||||| ||||| || ||||| |||||||||||||| || Sbjct 41494 CACGTCGAGCGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 41441 >seq39983 Length=4479 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| || || || |||||| || ||||| |||||| Sbjct 262 CCGCCGCGAAGACGCAGAACCAGGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 203 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||||||||| || || |||||||| ||||| | || Sbjct 202 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 143 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 142 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 84 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || |||||||||||||| ||||| ||||||||| Sbjct 83 GTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 35 >seq35973 Length=2546 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 372 GCCACCACGCAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 431 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || |||||||| || ||||| ||||| ||||| ||||| | || Sbjct 432 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 491 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||||||||||| ||| | | | | ||| | ||||| Sbjct 492 GATGCCTTCCTTGTCCTGAATTTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCA 550 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || || |||| ||||| |||||||||||||| Sbjct 551 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACGAAAATCTGCAT 599 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||||||| ||||| |||||||| ||||| |||||| Sbjct 144 GCCACCACGCAGGCGAAGCACCAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGCT 203 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||| ||||| ||||| ||||||||||| | || Sbjct 204 CAGCGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCAGGAGG 263 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||| ||| ||||||||||| ||| | | | | ||| | ||||| Sbjct 264 GATGCCTTCCTTATCCTGAATTTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCA 322 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || || |||| ||||| || || ||||||||| Sbjct 323 CGTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATG 372 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 || ||||| ||||| ||||||||||| | || | || ||||||||| ||||||||| Sbjct 4 CCAGCGAAGATCAGACGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTTTGC 63 Query 41783 TTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 || | || | | | | ||| | |||||| |||| ||| ||||| || || |||| Sbjct 64 TTGA-CGTTGTCGATCGAGTCTGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAA 122 Query 41842 CGTCTTTACGAAAATCTGCATG 41863 ||||| || |||||||||||| Sbjct 123 AGTCTTCACAAAAATCTGCATG 144 >seq43815 Length=14243 Score = 136 bits (150), Expect = 4e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||| ||||| | Sbjct 5247 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 5188 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | | |||||||||| ||||| ||||| || | Sbjct 5187 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTT-GACATTG 5129 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || ||||||| ||||| || Sbjct 5128 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5069 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 5068 AAGATCTGCATG 5057 >seq44488 Length=18910 Score = 125 bits (138), Expect = 7e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 18897 CCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 18838 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||||||||| || || |||||||| ||||| | || Sbjct 18837 AGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGG 18778 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | |||| || | | | | ||| || ||| | Sbjct 18777 ATGCCCTCCTTGTCC-TGAATCTTAGACTTC-ACATTGTCGATCGAGTCCGACGGCTCTA 18720 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | ||| || || || |||||||||||||| ||||| |||||||| || Sbjct 18719 CATCGAGCGTGATAGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTTT 18668 >seq3294 Length=374 Score = 125 bits (138), Expect = 7e-24 Identities = 171/232 (74%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT-GAATGTTATAGTCGG 41693 ||| || || || || | |||||| || || || |||||||| | ||||| |||||| Sbjct 373 GCCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTTGGATGTTGTAGTCGC 314 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 || || || |||| || |||||||||||||| || || |||||||| ||||| | | Sbjct 313 TCAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCG 254 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 | | || |||||||||| ||| | || | |||| ||| | | | | ||| || ||| Sbjct 253 GGATGCCCTCCTTGTCC-TGAATCTTAGACTTC-ACGTTGTCGATCGAGTCCGACGGCTC 196 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || | || || || || |||||||||||||| ||||| ||||||||| Sbjct 195 CACGTCAAGGGTAATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 144 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 144 GCCACCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 85 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || |||||||||||||| || || |||||||| ||||| | || Sbjct 84 CAGAGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGG 25 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 24 GATGCCCTCCTTGTCC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462036672712000