Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4378 136 8e-27 seq3030 113 1e-19 seq2734 113 1e-19 seq261 113 1e-19 >seq4378 Length=48165 Score = 136 bits (150), Expect = 8e-27 Identities = 418/633 (66%), Gaps = 25/633 (4%) Strand=Plus/Plus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14750 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14806 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14807 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 14866 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | ||||| ||||||| ||| || | |||| ||||| ||| | Sbjct 14867 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 14924 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 14925 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 14984 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 319695 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 14985 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15041 Query 319696 -ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 319753 | || ||| ||| | || || |||| || | |||| | || | Sbjct 15042 GCGGTGAAGTCCACGCCGGT--AAGCGTGTCAACGACCTCCTGGCGAG---GAGTG---T 15093 Query 319754 CCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGT 319813 |||| | | |||||| |||||||| | | | | | | || || | | Sbjct 15094 CCTTCAGGTCCTCATCAAACAGGATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGCTT 15153 Query 319814 CGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAAGC 319872 | | ||| || ||| | |||| |||| | || ||| || ||||| || |||||| Sbjct 15154 GCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAAGC 15212 Query 319873 TGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 319932 |||||||| ||| |||||||| || || || ||||| ||||| || || |||||| Sbjct 15213 TGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACAGA 15272 Query 319933 CCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCA 319992 ||||| |||| || || || ||| | || | ||||||||| ||||| | ||||| Sbjct 15273 CCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 15332 Query 319993 TATGCCAGAGAAAATTCACAATCACACAGATCC 320025 || || || || || ||||| | || || ||| Sbjct 15333 TAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15365 >seq3030 Length=322 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 320 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 261 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 260 CCCACGGTGGGC 249 >seq2734 Length=2803 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 2473 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 2414 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2413 CCCACGGTGGGC 2402 >seq261 Length=258 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 14 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13 CCCACGGTGGGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057755880762380