Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4314 136 4e-27 >seq4314 Length=236279 Score = 136 bits (150), Expect = 4e-27 Identities = 387/585 (66%), Gaps = 10/585 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || ||||| || | ||||| || | || || || |||||||| || | Sbjct 45927 AGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTC 45868 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||||| | | ||||| || Sbjct 45867 AGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCCGAGAA 45809 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || ||||| |||| |||||| || | | || |||| ||| | | |||| Sbjct 45808 GAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGG 45749 Query 16378 A-CGAATCCATTTCTGTACCCAT-TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || | |||| | | |||| ||| ||| ||| | | ||| || || || || Sbjct 45748 GTCGCA-CCATCTTAGCGCCCAACTCGCCTTCTTGGTC-ACACACGGGATGGTCTCAATT 45691 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | || | || || ||| | || | || ||||| ||||| || | | Sbjct 45690 GCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAG 45631 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||| |||||||| |||||||| ||||| || || || || |||||||| |||||||| Sbjct 45630 TACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCA 45571 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCAC 16613 | | |||||||| | ||| |||| ||||||||||| |||||||| || |||| Sbjct 45570 GGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATCAC 45513 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 | || ||||| || ||||| | |||||| ||||| | |||| ||| || | Sbjct 45512 TGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTC 45453 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| || || | || | | |||| ||||| | ||||| ||||| ||| | | Sbjct 45452 CCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCG 45393 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 |||| || ||||| | ||| | || | | || ||||| |||| Sbjct 45392 CCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATA 45348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511382270390320