Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq4401 114 1e-20 >seq4401 Length=89758 Score = 114 bits (126), Expect = 1e-20 Identities = 195/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 18948 TGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTT 19007 ||||||||| |||| || |||| || || |||||||||| ||| ||||||||| Sbjct 88465 TGGAATCCAGCGGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTT 88524 Query 19008 TACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTT 19067 ||||| || | || || ||||| || || | |||||| | |||| || |||||||| Sbjct 88525 TACGTGGCGGATGGCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTC 88584 Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTAC-CTACATAGTAGCGCATGTTAC 19126 || || ||||||||||| || | ||||| || || || | || | || || || || | Sbjct 88585 GGCGTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGAC-TTGTGGCCCAAGTGGC 88643 Query 19127 AGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 || | ||| | || || || || || | || || |||||||| | ||| |||| || Sbjct 88644 TGGTTTGAAACCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCA 88703 Query 19187 --TATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCC 19222 || || |||| |||| |||||| | || |||| Sbjct 88704 CGTAGAGCCGCTTCAAAA--ACAGCTAACGCGCACCCC 88739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399479528632170