Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4401 113 3e-20 >seq4401 Length=89758 Score = 113 bits (124), Expect = 3e-20 Identities = 398/614 (65%), Gaps = 6/614 (1%) Strand=Plus/Minus Query 101642 GTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACA 101701 || || || |||| || || ||||| | ||| ||| ||| | || | ||| | | Sbjct 88754 GTGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88695 Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 || | ||| ||||| || ||| | |||||||| || ||||| | | || || || Sbjct 88694 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88635 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || | | | || | || | ||| || || ||||| || ||||| || | ||||| Sbjct 88634 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 88575 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881 ||||| || | || |||| ||||| || | || ||||| || ||||| |||| Sbjct 88574 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 88515 Query 101882 AATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 || | ||||| || |||| | |||| | | | || | |||||| ||| ||| Sbjct 88514 AACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAAC 88455 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001 | |||| | || || |||||||| || | | |||| || | ||| || Sbjct 88454 ACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTTGTGGATCACCTCAGCAAGTTGATCC 88395 Query 102002 ACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCA 102060 || || | ||| | || || || || || | || | ||||| || || | ||| Sbjct 88394 ACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTG-TACTTGGCTCCAAAGTGACGCCA 88336 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 ||| ||||||||||| ||||| || |||||| | || || | | ||| | | || Sbjct 88335 CTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTGTC 88276 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAGC-TCT 102178 ||| | || |||||||| ||||||| || || | | || |||||| ||| | | Sbjct 88275 CAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGC-AGCGTAT 88217 Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238 || || ||| || || || ||||||| | ||| || | ||||||||||| ||| Sbjct 88216 GCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 88158 Query 102239 ACTCTCTTAGTAGT 102252 ||||||||||| || Sbjct 88157 ACTCTCTTAGTCGT 88144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361229071783526