Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4314 277 2e-69 seq4807 143 3e-29 seq3693 127 2e-24 seq2815 98.7 1e-15 >seq4314 Length=236279 Score = 277 bits (306), Expect = 2e-69 Identities = 436/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 45326 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 45385 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||| ||||| |||||||| | || ||| ||||| || | || | | | || Sbjct 45386 AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAG 45445 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || |||||||||||||| ||||||| || Sbjct 45446 -GACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTT 45504 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTG 116827 |||||||| || |||||||| |||||||| |||| || | ||| || | || || Sbjct 45505 TGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTA 45562 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | ||||| || |||||||||||||| || || ||||| |||||| | ||||| Sbjct 45563 CAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCA 45622 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||| ||||||||| | | | || |||| || | | || Sbjct 45623 GAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC-- 45680 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT-GGGCGCTGCG 117003 || || || || ||||| || ||||| || | ||||||| |||| ||||||| | Sbjct 45681 -TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGC-GAGTTGGGCGCTAAG 45738 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || | | || | || | | | ||||| || |||| || || || || || Sbjct 45739 ATGGTGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGA 45798 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| |||||| || | |||| || ||||||||||| || || ||||| Sbjct 45799 GGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 45858 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||| ||| |||||||||||| | || || ||| |||| ||||| Sbjct 45859 GCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTT 45918 Query 117184 TGCCTGTTTGCTGT 117197 ||| ||| || ||| Sbjct 45919 TGCTTGTCTGTTGT 45932 >seq4807 Length=216255 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| ||||||| || | | Sbjct 80 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCG 139 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | ||||| | ||||| || |||||||| | |||||| Sbjct 140 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 199 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 200 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 259 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || || ||| | ||| || | ||||| Sbjct 260 ATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGCGG 306 >seq3693 Length=10515 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||||||| || | | Sbjct 8118 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8177 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| || || | |||||| Sbjct 8178 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8237 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 8238 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 8297 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 8298 ATCCAGAAGG 8307 >seq2815 Length=67856 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 8891 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 8832 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||| || || ||| |||| || | Sbjct 8831 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 8772 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 8771 GGTGGTGGC 8763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515186831353760