Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4401 181 7e-41 >seq4401 Length=89758 Score = 181 bits (200), Expect = 7e-41 Identities = 418/618 (68%), Gaps = 14/618 (2%) Strand=Plus/Minus Query 97006 GTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 || ||||| || | || || ||||| ||||| | | || | || | ||| |||| Sbjct 88754 GTGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88695 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | ||| ||||| || | | |||| |||||||| ||||| ||| ||| || ||| Sbjct 88694 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88635 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || | | | || | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 88634 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 88575 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 ||||| || | || || | |||||| || | || ||||| ||| |||||||||| Sbjct 88574 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 88515 Query 97246 AATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCACACA 97303 || | ||||| || |||| |||||| | ||| | ||| |||||| ||| ||| Sbjct 88514 AACATGTGACATGGTGGCAGCGCCATCTCATTG--AGATCCGCTGGATTCCACGCAGACA 88457 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 || || | | ||||| ||||||||| ||| | | || | || | ||||| Sbjct 88456 ACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTTGTGGATCACCTCAGCAAGTTGAT 88397 Query 97364 CAACGCCTTCTCCACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | || || | |||| || | || ||| || || || || | |||||||| || | Sbjct 88396 CCACCCCCTGTCCAGTGTAGTCTGCATGCATAT--CCGTG-TACTTGGCTCCAAAGTGAC 88340 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAA-CCAAGC 97479 ||| ||||||||||| || ||||| ||||||||| |||| || || | | ||| | Sbjct 88339 GCCACTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCG-ACTGCAGTCCACGA 88281 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAG 97538 | || ||||| | |||||||| ||||||| || || | || ||||||| Sbjct 88280 CTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGC 88221 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 | | || || ||| || || || ||||||| ||||| ||| | ||||||||||| Sbjct 88220 GTATGCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCA 88162 Query 97599 AAATACTCTCTTAGTTGT 97616 |||||||||||||| || Sbjct 88161 GAATACTCTCTTAGTCGT 88144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346762757962820